PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G092091_P02 | ||||||||
Common Name | gpm693 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 209aa MW: 23155.3 Da PI: 6.6792 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.7 | 6.5e-11 | 40 | 88 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq GRMZM2G092091_P02 40 NSHSLAERLRRKKISERMKLLQDLVPGC----SKITGKAVMLDEIINYVQSLQ 88 58**************************....899*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.12E-11 | 35 | 92 | No hit | No description |
SuperFamily | SSF47459 | 4.45E-17 | 35 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.6E-17 | 37 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.447 | 37 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.7E-8 | 40 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.6E-10 | 43 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MEEGNRKISP KIQSKEDSSD GDGTKEDYVH IRAKRGQATN SHSLAERLRR KKISERMKLL 60 QDLVPGCSKI TGKAVMLDEI INYVQSLQRQ VEFLSMKLST VNPELGFDIE QIISKQMMLS 120 QDRHLAFYGV DPGSSSLTAP FNQGIVQPAM MCNISNPADV LHGTIHDVST MNQIPSMWEG 180 LQSMPQMNFN PGVAADSGTN NSGSMKIEQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.103201 | 0.0 | ear| endosperm| meristem| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G092091 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G092091_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035348 | 0.0 | BT035348.1 Zea mays full-length cDNA clone ZM_BFb0057A01 mRNA, complete cds. | |||
GenBank | EU974504 | 0.0 | EU974504.1 Zea mays clone 450957 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001131789.1 | 1e-154 | uncharacterized protein LOC100193160 | ||||
Refseq | XP_008647764.1 | 1e-154 | transcription factor bHLH62 isoform X1 | ||||
Refseq | XP_008647791.1 | 1e-154 | transcription factor bHLH62 isoform X1 | ||||
Refseq | XP_020395971.1 | 1e-154 | transcription factor bHLH62 isoform X1 | ||||
Refseq | XP_020396007.1 | 1e-154 | transcription factor bHLH62 isoform X1 | ||||
Swissprot | Q6NKN9 | 1e-52 | BH074_ARATH; Transcription factor bHLH74 | ||||
TrEMBL | A0A1D6L307 | 1e-153 | A0A1D6L307_MAIZE; Transcription factor bHLH62 | ||||
STRING | GRMZM2G092091_P01 | 1e-153 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10120.1 | 5e-55 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G092091_P02 |
Publications ? help Back to Top | |||
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