PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G091964_P03 | ||||||||
Common Name | uaz7c01g06 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NF-YA | ||||||||
Protein Properties | Length: 255aa MW: 26651.7 Da PI: 9.9773 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 104.4 | 9.7e-33 | 174 | 230 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e ekk+ k+rkpylheSRh+hA+rR+Rg+gGrF GRMZM2G091964_P03 174 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-VKARKPYLHESRHQHAMRRARGNGGRF 230 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.4E-36 | 172 | 233 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.498 | 173 | 233 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.7E-28 | 175 | 230 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 7.5E-25 | 176 | 198 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 178 | 198 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 7.5E-25 | 207 | 230 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MSSMESRPGR TNLVEPIGHG AALPSGGQAV QPWWTSSGAV LGAVSPAVVA VAPGSGTGIS 60 LSSSPAGGSG GGGAAKGAAS DESSEDSRRS GEPKDGSASQ EKNHATSQIP ALAPEYLAPY 120 SQLELNQSIA SAAYQYPDPY YAGMVAPYGS HAVAHFQLPG LTQSRMPLPL EVSEEPVYVN 180 AKQYHGILRR RQSRAKAELE KKVVKARKPY LHESRHQHAM RRARGNGGRF LNTKKSDSGA 240 PNGKAEPEKA STIVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 4e-23 | 174 | 238 | 2 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.9733 | 0.0 | cell lignification| ear| leaf| meristem| ovary |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G091964 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G091964_P03 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT063803 | 0.0 | BT063803.1 Zea mays full-length cDNA clone ZM_BFc0109B09 mRNA, complete cds. | |||
GenBank | EU962076 | 0.0 | EU962076.1 Zea mays clone 240068 nuclear transcription factor Y subunit A-1 mRNA, complete cds. | |||
GenBank | KJ728293 | 0.0 | KJ728293.1 Zea mays clone pUT6573 CCAAT-HAP2 transcription factor (CA2P16) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008676720.1 | 1e-175 | uncharacterized protein LOC100282719 isoform X1 | ||||
Refseq | XP_020407263.1 | 1e-175 | uncharacterized protein LOC100282719 isoform X1 | ||||
TrEMBL | A0A317YAL0 | 0.0 | A0A317YAL0_MAIZE; Nuclear transcription factor Y subunit A-7 | ||||
STRING | GRMZM2G091964_P01 | 1e-174 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.2 | 1e-34 | nuclear factor Y, subunit A7 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G091964_P03 |