PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G091964_P01
Common NameCA2P16, uaz7c01g06
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NF-YA
Protein Properties Length: 264aa    MW: 27788.9 Da    PI: 9.604
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G091964_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.41e-32174230158
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        +ep+YVNaKQy++Il+RRq+Rak+e ekk+  k+rkpylheSRh+hA+rR+Rg+gGrF
  GRMZM2G091964_P01 174 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-VKARKPYLHESRHQHAMRRARGNGGRF 230
                        69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.4E-36172233IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.498173233IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.9E-28175230IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.7E-25176198IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860178198IPR018362CCAAT-binding factor, conserved site
PRINTSPR006167.7E-25207230IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MSSMESRPGR TNLVEPIGHG AALPSGGQAV QPWWTSSGAV LGAVSPAVVA VAPGSGTGIS  60
LSSSPAGGSG GGGAAKGAAS DESSEDSRRS GEPKDGSASQ EKNHATSQIP ALAPEYLAPY  120
SQLELNQSIA SAAYQYPDPY YAGMVAPYGS HAVAHFQLPG LTQSRMPLPL EVSEEPVYVN  180
AKQYHGILRR RQSRAKAELE KKVVKARKPY LHESRHQHAM RRARGNGGRF LNTKKSDSGA  240
PNGGENAEHL HVPPDLLQLR QNEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A7e-23174238266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.97330.0cell lignification| ear| leaf| meristem| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G091964
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G091964_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0638030.0BT063803.1 Zea mays full-length cDNA clone ZM_BFc0109B09 mRNA, complete cds.
GenBankEU9620760.0EU962076.1 Zea mays clone 240068 nuclear transcription factor Y subunit A-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149098.10.0uncharacterized protein LOC100282719
TrEMBLB6TAR10.0B6TAR1_MAIZE; CCAAT-HAP2 transcription factor
STRINGGRMZM2G091964_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82053649
Representative plantOGRP6801672
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.23e-34nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  2. Luan M, et al.
    Family-wide survey of miR169s and NF-YAs and their expression profiles response to abiotic stress in maize roots.
    PLoS ONE, 2014. 9(3): p. e91369
    [PMID:24633051]