PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G091490_P01 | ||||||||
Common Name | LOC103629433 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 367aa MW: 39410.1 Da PI: 7.0947 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.8 | 1.5e-51 | 11 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k....kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 +ppGfrFhPt+eel+++yLkkkv++++++l +vi++vd++k+ePwd++ k + ++ +++wyfFs++d+ky+tg+r+nrat++g+Wkatg GRMZM2G091490_P01 11 VPPGFRFHPTEEELLTYYLKKKVASERIDL-DVIRDVDLNKLEPWDIQdKcrvgSSSGPQNDWYFFSHKDRKYPTGTRTNRATAAGFWKATG 101 69****************************.9***************94354433333566******************************* PP NAM 88 kdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +dk+++++ + +g++ktLvfy+grap+g+k+dW+mheyrl GRMZM2G091490_P01 102 RDKAIYAAggAARRIGMRKTLVFYQGRAPHGHKSDWIMHEYRL 144 *******9555566***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-55 | 7 | 154 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.948 | 11 | 193 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.4E-28 | 12 | 144 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.75E-55 | 181 | 193 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MSISVNGQSV VPPGFRFHPT EEELLTYYLK KKVASERIDL DVIRDVDLNK LEPWDIQDKC 60 RVGSSSGPQN DWYFFSHKDR KYPTGTRTNR ATAAGFWKAT GRDKAIYAAG GAARRIGMRK 120 TLVFYQGRAP HGHKSDWIMH EYRLDAADAD HHHPCCYPSP PPLPTAIVRG AAGPGDQVPQ 180 EQEGWVICRV FKKKNLVHHG AAQSSGGGGT AAAASKMESS PTSTTIIGDH ASDDALDHIL 240 QYMGGGDTKP ALLNHNQHLA AAADATTTTT AACPAAATSA GLYGNNKFMK LPPLEHAGGW 300 LPPSPGPCEY GASGIADWDA LDRLAAYELN GLSDASKNMA AFFDGDLWSM ARSVSALHAA 360 DLAMNNA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-43 | 11 | 195 | 15 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.85413 | 0.0 | pollen |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G091490 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in various aboveground tissues undergoing thickening of the lignified secondary wall such as anthers, filaments of stamens, the base of carpels, styles, the boundaries between siliques and pedicels, the midrib of leaf veins, and inflorescence stems, specifically in interfascicular fibers (sclerenchyma), cells differentiating into vascular vessels, and xylary fibers (secondary xylem). {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G091490_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT066179 | 0.0 | BT066179.2 Zea mays full-length cDNA clone ZM_BFc0059G10 mRNA, complete cds. | |||
GenBank | EU954655 | 0.0 | EU954655.1 Zea mays clone 1475529 NAM protein mRNA, complete cds. | |||
GenBank | JN634077 | 0.0 | JN634077.1 Zea mays secondary wall NAC transcription factor 1 mRNA, complete cds. | |||
GenBank | JX428485 | 0.0 | JX428485.1 Zea mays subsp. mays clone pUT3082 NAC86 NAC type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008648778.1 | 0.0 | NAC domain-containing protein 43 | ||||
Swissprot | Q84WP6 | 3e-98 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | A0A1D6LKH4 | 0.0 | A0A1D6LKH4_MAIZE; Putative NAC domain transcription factor superfamily protein | ||||
STRING | GRMZM2G091490_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1597 | 38 | 112 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 2e-74 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G091490_P01 |
Entrez Gene | 103629433 |