PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G091433_P03 | ||||||||
Common Name | cl181_1c, ZEAMMB73_475550 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NF-YC | ||||||||
Protein Properties | Length: 107aa MW: 12009 Da PI: 10.2194 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 61.6 | 1.6e-19 | 7 | 86 | 19 | 98 |
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 +++P arikki++adedv +i+ +Pvl+s++ elf+ +l r++ + ++ +tl+ ++++v+r fdfl+++v + GRMZM2G091433_P03 7 TRFPAARIKKIMQADEDVGKIALAVPVLVSRSLELFLQDLIDRTYEITLQSGAKTLNSFHLKQCVKRYSSFDFLTEVVSK 86 579*************************************************************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 9.43E-21 | 3 | 88 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 7.5E-26 | 3 | 72 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.0E-19 | 8 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
MRKKLGTRFP AARIKKIMQA DEDVGKIALA VPVLVSRSLE LFLQDLIDRT YEITLQSGAK 60 TLNSFHLKQC VKRYSSFDFL TEVVSKVPDL GGADSCGDER GLPRRRP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 1e-24 | 2 | 71 | 5 | 74 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.96688 | 1e-158 | ear| embryo| endosperm| meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G091433 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G091433_P03 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF464905 | 1e-177 | AF464905.1 Zea mays repressor protein (DrAp1) mRNA, complete cds. | |||
GenBank | BT035853 | 1e-177 | BT035853.1 Zea mays full-length cDNA clone ZM_BFb0086A16 mRNA, complete cds. | |||
GenBank | HQ858752 | 1e-177 | HQ858752.1 Zea mays clone UT1461 CCAAT transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001105089.1 | 2e-71 | uncharacterized protein LOC541965 | ||||
Swissprot | A0JPP1 | 7e-31 | NC2A_RAT; Dr1-associated corepressor | ||||
TrEMBL | B6SI55 | 5e-70 | B6SI55_MAIZE; Repressor protein | ||||
TrEMBL | F1DJZ4 | 5e-70 | F1DJZ4_MAIZE; CCAAT transcription factor (Fragment) | ||||
TrEMBL | Q8W0W6 | 5e-70 | Q8W0W6_MAIZE; CCAAT-HAP5-transcription factor 59 | ||||
STRING | GRMZM2G091433_P01 | 8e-71 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 7e-53 | nuclear factor Y, subunit C11 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G091433_P03 |