PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G091003_P01
Common NameZEAMMB73_987553
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 332aa    MW: 35450.2 Da    PI: 7.5278
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G091003_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.6e-1281131154
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        +r++h ++Er+RR+++N+ ++ Lr+ +P+a   + ++ + a+i+  A+ ++++L
  GRMZM2G091003_P01  81 QRMTHIAVERNRRRQMNEYLAALRSTMPEA---YVQRGDQASIVGGAIVFVREL 131
                        79****************************...***************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.26E-1571145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.24E-1179136No hitNo description
PROSITE profilePS5088814.27280131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-1081131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-1381145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-986137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MPALVGAPPG DATVLVYDTF NAASFLLDTA AFCDGAGIIA VAPASANQQQ HAPPEREAPT  60
RARKRRRRAR NCKSREEAET QRMTHIAVER NRRRQMNEYL AALRSTMPEA YVQRGDQASI  120
VGGAIVFVRE LEQQLQCLEA QKRKLLHVPA AAKPDATPAH ASSSSTKIRV DSAAASTSNC  180
SSSSSVTEDA AGHARPAPFA RFFTYPQYLW CHSARGAAAA AAAEEEEDGR RLGVADVEVA  240
LVEAHGSIRV MTARRPGQLV CLVTALQALR LAVLHLSVTT LDALVLYSIS VKVEEGCGLA  300
TADDVAAAVH HVLCIVDAEA TDQQLLAAAR PQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16266RKRRR
26269RKRRRRAR
38192RMTHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.969010.0cell lignification| ear| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G091003
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G091003_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9489830.0EU948983.1 Zea mays clone 392699 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008678968.10.0transcription factor bHLH94
TrEMBLK7TZI10.0K7TZI1_MAIZE; Putative HLH DNA-binding domain superfamily protein
STRINGGRMZM2G091003_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.11e-50bHLH family protein