PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G090837_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 295aa    MW: 30942.5 Da    PI: 7.4736
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G090837_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.93e-151462148
                       TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                       +g+W++eEd +l++++ + G+g +W + +++ g++R++k+c++rw++yl
  GRMZM2G090837_P01 14 KGPWSPEEDRKLKEYIDENGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62
                       79*********************************************97 PP
2Myb_DNA-binding37.74.6e-1269111246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        g ++ +Ed ++  +++  G++ W+ Ia+ ++ gRt++++k++w++
  GRMZM2G090837_P01  69 GDFSDDEDRIICSLFATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                        679******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.316962IPR017930Myb domain
SuperFamilySSF466898.58E-2611109IPR009057Homeodomain-like
SMARTSM007171.5E-111364IPR001005SANT/Myb domain
PfamPF002491.3E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-221569IPR009057Homeodomain-like
CDDcd001671.04E-81662No hitNo description
PROSITE profilePS5129421.60263117IPR017930Myb domain
SMARTSM007171.9E-1167115IPR001005SANT/Myb domain
PfamPF002496.5E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-2370118IPR009057Homeodomain-like
CDDcd001673.08E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGRAPCCDKA SVKKGPWSPE EDRKLKEYID ENGTGGNWIA LPHKAGLKRC GKSCRLRWLN  60
YLRPNLKHGD FSDDEDRIIC SLFATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLVHG  120
LERYTAHSLS QRSSSTVSSS SSAAVAASPA EAAPIVPLQH LSSPHDYSHL IYSGGGGGYG  180
ASSMSTSLLS AAAAAAAGSR DREQQTLRTD APCLVDSGGG GGGHGIYFDE TCASAISGSS  240
VVHGLGTGNF VFGGLQLLQA QALLLATSGA ANQLDEPYSF AASCCYGEEA AAADG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25141177108B-MYB
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G090837
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G090837_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008670028.10.0transcription factor MYB36
TrEMBLA0A1D6ELQ70.0A0A1D6ELQ7_MAIZE; Transcription factor RAX2
STRINGGRMZM2G090837_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.14e-74myb domain protein 36