PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G090595_P01 | ||||||||
Common Name | LOC542197 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 385aa MW: 42332.4 Da PI: 11.7756 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.9 | 8.5e-06 | 94 | 116 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H GRMZM2G090595_P01 94 FVCEVCNKGFQREQNLQLHRRGH 116 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.3 | 0.00051 | 171 | 193 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +++ GRMZM2G090595_P01 171 WKCDKCSKRYAVQSDWKAHSKVC 193 58*****************9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 4.9E-6 | 93 | 116 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.27E-7 | 93 | 116 | No hit | No description |
PROSITE profile | PS50157 | 11.094 | 94 | 116 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 2.3E-5 | 94 | 116 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.0041 | 94 | 116 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 96 | 116 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 290 | 136 | 166 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.3E-4 | 159 | 191 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.27E-7 | 166 | 191 | No hit | No description |
SMART | SM00355 | 140 | 171 | 191 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MASNSSAAAV AAMFGIRDAD HQDQMKPLLA QQHQHQHQHQ MPPAPLLNAA SSSAGPGQAA 60 GATPPAVKKK RNLPDPDAEV IALSPKTLLA TNRFVCEVCN KGFQREQNLQ LHRRGHNLPW 120 KLKQKDPSQA QRRRVYLCPE PTCAHHDPSR ALGDLTGIKK HFCRKHGEKK WKCDKCSKRY 180 AVQSDWKAHS KVCGTREYRC DCGTLFSRRD SFITHRGFLR RPRAGERPGC RPQASPPATS 240 TAPPTRPTWG SASRRSVPTS HPHSVRTLTA TIRTSSGSVA ATPRAALSIF WGRPTPPRSG 300 PCRLHHRRHF SWALRRSLAQ ATAAGPTGSC RASRSTVSCI CRISKATAPG VPRRRRLRVS 360 STLATSQTVQ TAQVLPAMAM QARDT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-28 | 167 | 218 | 3 | 54 | Zinc finger protein JACKDAW |
5b3h_F | 2e-28 | 167 | 218 | 3 | 54 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.19824 | 0.0 | endosperm| meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G090595 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G090595_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT054258 | 0.0 | BT054258.1 Zea mays full-length cDNA clone ZM_BFb0200O05 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001105281.2 | 1e-161 | INDETERMINATE-related protein 10 | ||||
TrEMBL | B7ZY66 | 1e-160 | B7ZY66_MAIZE; Indeterminate domain p10 | ||||
STRING | GRMZM2G090595_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP202 | 38 | 320 | Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-96 | indeterminate(ID)-domain 2 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G090595_P01 |