PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G090332_P01 | ||||||||
Common Name | LOC103648425 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 194aa MW: 20797.3 Da PI: 6.3634 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15 | 7.3e-05 | 70 | 92 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C + F++ L H+++H GRMZM2G090332_P01 70 YTCAFCRREFKSAQALGGHMNVH 92 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.98E-6 | 67 | 96 | No hit | No description |
PROSITE profile | PS50157 | 10.949 | 70 | 97 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 72 | 92 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MAPTSSTELA HVKHITLHQF LKQQQLLQHR LKPAVMWGWP ATAAAIGRHV PDDVADDDDG 60 LGGAWPPRSY TCAFCRREFK SAQALGGHMN VHRRDRAKMR GGHHGSAAAQ APQLGGAASQ 120 ATDETPHAAP AAKYAVLYPI LNSNAAAGVL IPSGDVLLSG PVALQAAAHD LCHVSDDDDE 180 EDSDVDLELR LWWP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 3e-13 | 65 | 92 | 2 | 29 | superman protein |
2l1o_A | 3e-13 | 65 | 92 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G090332 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G090332_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL662981 | 3e-48 | AL662981.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086O06, complete sequence. | |||
GenBank | AP014960 | 3e-48 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 3e-48 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008671121.1 | 1e-140 | transcriptional regulator SUPERMAN | ||||
TrEMBL | A0A1D6E1J1 | 1e-139 | A0A1D6E1J1_MAIZE; Transcriptional regulator SUPERMAN | ||||
TrEMBL | A0A3L6FWT5 | 1e-139 | A0A3L6FWT5_MAIZE; Zinc finger protein 10 | ||||
STRING | GRMZM2G090332_P01 | 1e-140 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11852 | 26 | 33 | Representative plant | OGRP576 | 15 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23130.1 | 8e-21 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G090332_P01 |
Entrez Gene | 103648425 |