PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G089812_P02
Common NameLOC100281601
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NF-YC
Protein Properties Length: 245aa    MW: 25989.3 Da    PI: 5.0564
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G089812_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC169.63.7e-53451501101
              NF-YC   1 qlksfwekq.....iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 
                        ql++fw++q     + +a+dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+++d+aaa++rtd
  GRMZM2G089812_P02  45 QLQAFWAYQrqeaeRASASDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQRNDVAAAIARTD 136
                        89*****997665555689************************************************************************* PP

              NF-YC  88 ifdflvdivprdel 101
                        +fdflvdivpr+e 
  GRMZM2G089812_P02 137 VFDFLVDIVPREEA 150
                        ***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.58E-3135141IPR009072Histone-fold
Gene3DG3DSA:1.10.20.104.7E-3761132IPR009072Histone-fold
PfamPF008082.8E-2069132IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0010468Biological Processregulation of gene expression
GO:0048586Biological Processregulation of long-day photoperiodism, flowering
GO:0051247Biological Processpositive regulation of protein metabolic process
GO:2000905Biological Processnegative regulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDNQPLPYST GQPPAPGGAP VAGMPGAAGL PPVPHHHLLQ QQQAQLQAFW AYQRQEAERA  60
SASDFKNHQL PLARIKKIMK ADEDVRMISA EAPVLFAKAC ELFILELTIR SWLHAEENKR  120
RTLQRNDVAA AIARTDVFDF LVDIVPREEA KEEPGSALGF AAPGTGVVGA GAPGGAPAAG  180
MPYYYPPMGQ PAPMMPAWHV PAWDPAWQQG AADVDQSGSF SEEGQGFGAG HGGAASFPPA  240
PPTSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-5153147395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119125RRTLQRN
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G089812
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G089812_P02
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases at the end of the dark period, peaks in the beginning of the light period and gradually decreases during daytime. {ECO:0000269|PubMed:26542958}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0857200.0BT085720.2 Zea mays full-length cDNA clone ZM_BFc0051B15 mRNA, complete cds.
GenBankEU9572200.0EU957220.1 Zea mays clone 1585988 nuclear transcription factor Y subunit C-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147992.11e-177nuclear transcription factor Y subunit C-1
RefseqXP_008675138.11e-177nuclear transcription factor Y subunit C-1 isoform X1
SwissprotA6BLW45e-99NFYC2_ORYSJ; Nuclear transcription factor Y subunit C-2
TrEMBLA0A317YFQ91e-176A0A317YFQ9_MAIZE; Nuclear transcription factor Y subunit C-2
TrEMBLB6SWV51e-176B6SWV5_MAIZE; Nuclear transcription factor Y subunit C-1
TrEMBLK0DFD11e-176K0DFD1_MAIZE; CA5P11 CCAAT-HAP5 type transcription factor (Fragment)
STRINGGRMZM2G089812_P011e-177(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.25e-63nuclear factor Y, subunit C4
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]