PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G089812_P01 | ||||||||
Common Name | LOC100281601 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NF-YC | ||||||||
Protein Properties | Length: 245aa MW: 25989.3 Da PI: 5.0564 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 169.6 | 3.7e-53 | 45 | 150 | 1 | 101 |
NF-YC 1 qlksfwekq.....iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 ql++fw++q + +a+dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+++d+aaa++rtd GRMZM2G089812_P01 45 QLQAFWAYQrqeaeRASASDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQRNDVAAAIARTD 136 89*****997665555689************************************************************************* PP NF-YC 88 ifdflvdivprdel 101 +fdflvdivpr+e GRMZM2G089812_P01 137 VFDFLVDIVPREEA 150 ***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.58E-31 | 35 | 141 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 4.7E-37 | 61 | 132 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.8E-20 | 69 | 132 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0048586 | Biological Process | regulation of long-day photoperiodism, flowering | ||||
GO:0051247 | Biological Process | positive regulation of protein metabolic process | ||||
GO:2000905 | Biological Process | negative regulation of starch metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MDNQPLPYST GQPPAPGGAP VAGMPGAAGL PPVPHHHLLQ QQQAQLQAFW AYQRQEAERA 60 SASDFKNHQL PLARIKKIMK ADEDVRMISA EAPVLFAKAC ELFILELTIR SWLHAEENKR 120 RTLQRNDVAA AIARTDVFDF LVDIVPREEA KEEPGSALGF AAPGTGVVGA GAPGGAPAAG 180 MPYYYPPMGQ PAPMMPAWHV PAWDPAWQQG AADVDQSGSF SEEGQGFGAG HGGAASFPPA 240 PPTSE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-51 | 53 | 147 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 119 | 125 | RRTLQRN |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G089812 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G089812_P01 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases at the end of the dark period, peaks in the beginning of the light period and gradually decreases during daytime. {ECO:0000269|PubMed:26542958}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT085720 | 0.0 | BT085720.2 Zea mays full-length cDNA clone ZM_BFc0051B15 mRNA, complete cds. | |||
GenBank | EU957220 | 0.0 | EU957220.1 Zea mays clone 1585988 nuclear transcription factor Y subunit C-1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001147992.1 | 1e-177 | nuclear transcription factor Y subunit C-1 | ||||
Refseq | XP_008675138.1 | 1e-177 | nuclear transcription factor Y subunit C-1 isoform X1 | ||||
Swissprot | A6BLW4 | 5e-99 | NFYC2_ORYSJ; Nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | A0A317YFQ9 | 1e-176 | A0A317YFQ9_MAIZE; Nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | B6SWV5 | 1e-176 | B6SWV5_MAIZE; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | K0DFD1 | 1e-176 | K0DFD1_MAIZE; CA5P11 CCAAT-HAP5 type transcription factor (Fragment) | ||||
STRING | GRMZM2G089812_P01 | 1e-177 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7345 | 35 | 51 | Representative plant | OGRP315 | 17 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 5e-63 | nuclear factor Y, subunit C4 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G089812_P01 |
Entrez Gene | 100281601 |
Publications ? help Back to Top | |||
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