PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G089782_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | GRAS | ||||||||
Protein Properties | Length: 345aa MW: 37232.6 Da PI: 7.7965 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 77.5 | 2.3e-24 | 122 | 219 | 40 | 135 |
GRAS 40 RlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLl 129 +aay A + lar ++ ++++ p+e ++ ++ ++al++++ v+Pi++f h+t N+ +l a++g+++vH+iDfdi+qGlQWp+Ll GRMZM2G089782_P01 122 SVAAYNHDATNYYLARLGEMVFNISLPREITNGAvaIADDAMALRVLNVVTPIPRFLHFTLNERVLCAFDGHDCVHVIDFDIKQGLQWPSLL 213 68999999999999999999999998888886667789999*************************************************** PP GRAS 130 qaLasR 135 q L+ R GRMZM2G089782_P01 214 QILTMR 219 ***999 PP | |||||||
2 | GRAS | 63.1 | 5.6e-20 | 222 | 315 | 259 | 352 |
GRAS 259 ealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy 349 +al+yy+a fd + +a+l+ +s +r+k E++ ++rei+n+va e a+r+erhet++ Wr r++e F++ +++++a q ++ r+++ y GRMZM2G089782_P01 222 RALRYYVAAFDVVeAAGLADASPARAKAEEM-FAREIRNAVAFEAADRFERHETFAGWRWRMQEGRFQNTGIGDREALQGCMIARMFAPGNY 312 69***********8899**************.*******************************************************94448 PP GRAS 350 rve 352 +++ GRMZM2G089782_P01 313 SMQ 315 776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 12.961 | 60 | 345 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.1E-22 | 122 | 219 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.0E-17 | 222 | 315 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MALCGRGAGP LSGPMRRTRA RRTAQAVGSD DGDKAEEEKA FLVPSAAVFP HGMSAAAAGL 60 SLAVAKKKEF SKSPSNSMAS SGGTDGGSSV VLWPEQLHAQ NGAPARVEAM EPVIALTACT 120 NSVAAYNHDA TNYYLARLGE MVFNISLPRE ITNGAVAIAD DAMALRVLNV VTPIPRFLHF 180 TLNERVLCAF DGHDCVHVID FDIKQGLQWP SLLQILTMRG SRALRYYVAA FDVVEAAGLA 240 DASPARAKAE EMFAREIRNA VAFEAADRFE RHETFAGWRW RMQEGRFQNT GIGDREALQG 300 CMIARMFAPG NYSMQALLSY GTNAGAGVLI LYCSFSVQCF KLALK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.34299 | 1e-103 | cell lignification| meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G089782 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the shoot apical meristem (SAM) and elongating cells of young seedlings. Expressed in leaf joints, culms, internodes, stems, young panicles, primary roots and lateral roots. {ECO:0000269|PubMed:19220793}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22685166}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G089782_P01 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269|PubMed:19220793}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT069876 | 1e-101 | BT069876.2 Zea mays full-length cDNA clone ZM_BFb0307D24 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020406475.1 | 1e-112 | LOW QUALITY PROTEIN: protein DWARF AND LOW-TILLERING | ||||
Swissprot | Q9LWU9 | 7e-44 | DLT_ORYSJ; Protein DWARF AND LOW-TILLERING | ||||
TrEMBL | A0A1D6MWL2 | 0.0 | A0A1D6MWL2_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G089782_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6404 | 34 | 55 | Representative plant | OGRP5507 | 15 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63100.1 | 3e-23 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G089782_P01 |
Publications ? help Back to Top | |||
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