PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G089686_P02 | ||||||||
Common Name | ZEAMMB73_199899, Zm.125056 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB_related | ||||||||
Protein Properties | Length: 188aa MW: 21150.9 Da PI: 8.487 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.7 | 3.6e-10 | 39 | 68 | 22 | 47 |
T.....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 22 g.....tWktIartmgkgRtlkqcksrwqky 47 + +W++Iar+++ gRt++++k++w+++ GRMZM2G089686_P02 39 RvtracRWSAIARCLP-GRTDNEIKNYWRTH 68 1555668*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.43E-7 | 44 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.27E-7 | 45 | 69 | No hit | No description |
PROSITE profile | PS50090 | 6.365 | 45 | 69 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 3.2E-7 | 45 | 68 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-11 | 45 | 69 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
DYSSPALLVF ATSACALVGV GVGGRRLTLL GKLKRCRRRV TRACRWSAIA RCLPGRTDNE 60 IKNYWRTHFK KARPSRRARA QLLHQYQLQQ QEQRRQYLQL LQPQQLQQQQ LGVVKQQQLE 120 QQSPPEPHHQ AMMDSLQSTA ACYCSPVPEE CCPLPADDDA VLWDSLWRLV DGDGCGDGDG 180 DGSSGGDY |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G089686 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G089686_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU960450 | 0.0 | EU960450.1 Zea mays clone 224989 MYB305 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001148697.1 | 1e-101 | uncharacterized protein LOC100282313 | ||||
TrEMBL | A0A3L6DET8 | 1e-100 | A0A3L6DET8_MAIZE; Transcription factor MYB57 | ||||
TrEMBL | B6T635 | 1e-100 | B6T635_MAIZE; MYB305 | ||||
STRING | GRMZM2G089686_P01 | 1e-101 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13480.1 | 1e-11 | myb domain protein 79 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G089686_P02 |