PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G089662_P01
Common NameGRAS57, LOC103631021
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 726aa    MW: 82524.8 Da    PI: 7.9209
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G089662_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS341.71.3e-1043547241374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        l++lL++cA+av+++d  la++l++++++++s dg+  qR a+yf+++L+arl++++s+l++++ +++ s   ++ +l++++++  v+P+++
  GRMZM2G089662_P01 354 LRTLLIHCAQAVAADDRLLASELIKKIRQHSSRDGEWCQRQAFYFVNGLEARLTGTGSQLFHKMLAKRVS---EDVVLKIYNFYLAVCPFHR 442
                        6789**********************************************************99999998...899999************* PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
                         s+  aNq+I+e   g++rvHi+Df++ +G+QWp+L+q + ++ + +p+lRiTg++ p++g    e++e+ g+ La++A+  +vpf+++  +
  GRMZM2G089662_P01 443 ASYTFANQTIMETSVGQSRVHIVDFGVCYGFQWPSLIQLFGEQ-GVTPRLRITGIEVPRPGfsPLENIERAGKLLADYANMYKVPFQYQG-I 532
                        *****************************************95.889*************99999*************************.7 PP

               GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                         +r ed+++e+L+++++E+l++n+++++++l de+v+++s+rd+vLk++++++Pkv ++   + +++s+ F++rf e l +ys+lfd+l+++
  GRMZM2G089662_P01 533 YSRYEDIQIEDLNIEEDEVLIINCMYRMKNLGDETVAMDSARDRVLKIMRRMNPKVSIFGILNGSYSSPFFVTRFKELLFHYSSLFDMLNTN 624
                        99****************************************************************************************** PP

               GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                        ++r++e+r+ +E  llgr+i n++acega+r+er et+++W++r  +aGF+++pl+  ++k++  + ++++ + +  +e++g+l++gWk+r 
  GRMZM2G089662_P01 625 VSRDNEARKLLEGGLLGRDILNIIACEGADRTERPETYQQWQARCLKAGFEQLPLDPAIMKSVLWMKKEIYHEDFVADEDNGWLLQGWKGRV 716
                        ***********************************************************************999****************** PP

               GRAS 367 LvsvSaWr 374
                        L+++S W+
  GRMZM2G089662_P01 717 LYALSKWK 724
                        *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.996328704IPR005202Transcription factor GRAS
PfamPF035144.3E-102354724IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MPIEPSFDDL YTITAPGQRQ DGSSFSSQQQ LTLYDHRLCD PQLFHKPTNE SNMQFSGVVT  60
IPGMHNVSTN LGQNHLQITT GVSPDYQRIR SNNALHHISQ ILMEDVDERV GSHEGGAALQ  120
DAEKAFYDIL QQVYPPSLDW SPLHNSSEAG GPNEGSSNYH KRPRRSSFTN DISSHSMLQS  180
LPAPLSPYGY GRSLLLPYQS LANTGRASRF GSPALQTRRE AEDAKWFDKM VINLDDDKLF  240
ISILTTAKAK RIVGKSKYAI FQITGHRNNP YIQDLDTREG RSKKHTISCE ISRNEKLDTV  300
LLCYGLDCFI ETARLRDMAV KEVSKDAPKG QSKANAQQKS QGGTRQLKKE VVDLRTLLIH  360
CAQAVAADDR LLASELIKKI RQHSSRDGEW CQRQAFYFVN GLEARLTGTG SQLFHKMLAK  420
RVSEDVVLKI YNFYLAVCPF HRASYTFANQ TIMETSVGQS RVHIVDFGVC YGFQWPSLIQ  480
LFGEQGVTPR LRITGIEVPR PGFSPLENIE RAGKLLADYA NMYKVPFQYQ GIYSRYEDIQ  540
IEDLNIEEDE VLIINCMYRM KNLGDETVAM DSARDRVLKI MRRMNPKVSI FGILNGSYSS  600
PFFVTRFKEL LFHYSSLFDM LNTNVSRDNE ARKLLEGGLL GRDILNIIAC EGADRTERPE  660
TYQQWQARCL KAGFEQLPLD PAIMKSVLWM KKEIYHEDFV ADEDNGWLLQ GWKGRVLYAL  720
SKWKVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-473587248375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G089662
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G089662_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276930.0KJ727693.1 Zea mays clone pUT5632 GRAS transcription factor (GRAS57) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008650262.10.0scarecrow-like protein 9
TrEMBLK7UES90.0K7UES9_MAIZE; GRAS transcription factor (Fragment)
STRINGGRMZM2G089662_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Representative plantOGRP1995022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-157GRAS family protein