PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G089638_P01
Common NameLOC103650647, Zm.154943
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TCP
Protein Properties Length: 416aa    MW: 42906.7 Da    PI: 5.9164
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G089638_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.39.4e-41932453134
                TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..... 88 
                        ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+ +  + s +s a+++  +     
  GRMZM2G089638_P01  93 VAKRPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAILAATGTGTIPANYSsLNISVRSGAATPARAaapfp 184
                        789*****************************************************************777444444444443333377888 PP

                TCP  89 ...kaaksaakskksqksaas.alnlakesr...........akarararertrekmrikn 134
                            +   ++++  +q++ ++ +  ++++++           a  +a  r+r re+ ++++
  GRMZM2G089638_P01 185 alaLHPHHHQPGPAQQHDVSAmMAGYHHHHHllpspqqqdpsAGGDAYTRKRYREDLFKED 245
                        8863333333444444444440444555555888888877777777777777777776654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.0E-3698249IPR005333Transcription factor, TCP
PROSITE profilePS5136928.3198152IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MDHGGGGGAP SSSNSGGAAA AGGGRGGDHH PFFYAAAAAS NSGVPQQQQQ QPSPFTGALA  60
ITPVPEQPQP SPAAGGDKKA LVPAAPAAAG PVVAKRPSKD RHTKVDGRGR RIRMPALCAA  120
RVFQLTRELG HKSDGETIEW LLQQAEPAIL AATGTGTIPA NYSSLNISVR SGAATPARAA  180
APFPALALHP HHHQPGPAQQ HDVSAMMAGY HHHHHLLPSP QQQDPSAGGD AYTRKRYRED  240
LFKEDDDRQD PRAPKAREQQ QAATAPPSAA MWAVAPNAAA PSGGFWMLPV SASSAEQPMC  300
TWPFSGGGTG TVQAPLQFMS RASYPSGAAG GAISDTNLGM LAALNAYNRG GSEEQQPEGE  360
QQHGGGNMLA ALNAYNRGGS EEQQPEGEQP HGGGNDDDDE DGDDSAEENN GNDSSQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.649250.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G089638
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G089638_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269510.0KJ726951.1 Zea mays clone pUT3645 TCP transcription factor (TCP12) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008674430.10.0transcription factor PCF3
SwissprotQ53PH22e-64PCF3_ORYSJ; Transcription factor PCF3
TrEMBLA0A1D6MYV80.0A0A1D6MYV8_MAIZE; Transcription factor TCP8
TrEMBLA0A3L6FKD40.0A0A3L6FKD4_MAIZE; Transcription factor PCF3
STRINGGRMZM2G089638_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49342652
Representative plantOGRP45911023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.13e-43TCP family protein