PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G089636_P01
Common NameLOC103629255
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 626aa    MW: 71576.2 Da    PI: 6.0342
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G089636_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS366.53.7e-1122486182374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                        +  L++cA+a+  ++l  a++lL++++ +asp+gd  qRla y++++L+arla+++s++yk l  ++t+    ++ l+a++lf+ v+P+ ++
  GRMZM2G089636_P01 248 RAHLMQCAQAIVVNNLPFASELLEKIRRHASPYGDGSQRLALYLANGLEARLAGTGSQMYKELMEKQTR---ATDMLKAYRLFNAVCPFARV 336
                        678****************************************************************99...9******************* PP

               GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183
                        ++   Nq+I +  +g+ +vHiiDf+i+ G+QWp+L+q +a+R++gpp+lRiTg++ p++g   +  +e+tg+rL+++Ae ++vpfe++  +a
  GRMZM2G089636_P01 337 AYYFSNQTIADLSNGQPKVHIIDFGITLGFQWPSLIQRFAKREGGPPKLRITGIDVPQPGfrPRAIIEATGKRLTEYAEMFNVPFEYQD-IA 427
                        ***********************************************************9999999***********************.7* PP

               GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                        + +ed+ +e+L+++++Eal+Vn++++ ++l de+ +++s+rd+vL+++k+++P+v+++   +  ++s+ Fl+rf e + +ysalfd+l+a++
  GRMZM2G089636_P01 428 SPWEDICIENLNIDNDEALIVNCMFRTQYLGDETEDIDSARDRVLRTMKRINPEVLILGIVNGMYSSPFFLTRFREVVFHYSALFDMLDATA 519
                        ******************************************************************************************** PP

               GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
                        p+ +e+ri +Er llg ++ nvvacegaer+ r et++ W+ r  +aGFk++p+++ ++k       k++ + + ++e+s +l++gWk+r +
  GRMZM2G089636_P01 520 PQSHEDRIQIERDLLGASALNVVACEGAERIVRPETYKPWQVRCLKAGFKQLPVDKAIMKRSIDEKDKHYHEDFVIDEDSRWLIQGWKGRIM 611
                        ************************************************************9999999999888******************* PP

               GRAS 368 vsvSaWr 374
                         +vS+W+
  GRMZM2G089636_P01 612 HAVSSWK 618
                        ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.744221598IPR005202Transcription factor GRAS
PfamPF035141.3E-109248618IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006340anatomyadult vascular leaf
PO:0006505anatomycentral spike of ear inflorescence
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    Send to blast
MESPEYCEIN SNMTLDYINR LLMEEGTDEK ASIYQQLDAL QAMEKPFYDI IGQTYPSSPM  60
ETMISRDNQV DCPQDNYSKQ ARRGCFVSDI LEPQGVHLVA NDWTYECDHF SLQFERGAEE  120
ANKLVPNIAK LADLDSNGLS DSNRMIEATI GQKGKHGSKI RSHPHVDLEF LEARNSKHLA  180
ISASETTRDE MFDSVLLCDC RFNCDAAHIR EIKAKEANNS SQNVRRKGYG QRQVKSRGKK  240
KEEEVDLRAH LMQCAQAIVV NNLPFASELL EKIRRHASPY GDGSQRLALY LANGLEARLA  300
GTGSQMYKEL MEKQTRATDM LKAYRLFNAV CPFARVAYYF SNQTIADLSN GQPKVHIIDF  360
GITLGFQWPS LIQRFAKREG GPPKLRITGI DVPQPGFRPR AIIEATGKRL TEYAEMFNVP  420
FEYQDIASPW EDICIENLNI DNDEALIVNC MFRTQYLGDE TEDIDSARDR VLRTMKRINP  480
EVLILGIVNG MYSSPFFLTR FREVVFHYSA LFDMLDATAP QSHEDRIQIE RDLLGASALN  540
VVACEGAERI VRPETYKPWQ VRCLKAGFKQ LPVDKAIMKR SIDEKDKHYH EDFVIDEDSR  600
WLIQGWKGRI MHAVSSWKPK ESYTNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-552306201380Protein SCARECROW
5b3h_D1e-552306201380Protein SCARECROW
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G089636
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G089636_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7270160.0KJ727016.1 Zea mays clone pUT3997 GRAS transcription factor (GRAS60) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020395784.10.0scarecrow-like protein 9
TrEMBLA0A1D6LHS70.0A0A1D6LHS7_MAIZE; Uncharacterized protein
STRINGGRMZM2G089636_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Representative plantOGRP26615129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-159GRAS family protein