PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G089557_P01 | ||||||||
Common Name | Zm.127435 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 219aa MW: 22524.3 Da PI: 8.8122 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.4 | 0.00047 | 95 | 117 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cgk++++ L H +H GRMZM2G089557_P01 95 YECSVCGKVYTSYQALGGHKTSH 117 99**********99998888777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.71E-9 | 94 | 117 | No hit | No description |
Pfam | PF13912 | 2.5E-13 | 94 | 119 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.972 | 95 | 117 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.025 | 95 | 117 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 97 | 117 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.71E-9 | 149 | 176 | No hit | No description |
Pfam | PF13912 | 4.5E-12 | 153 | 178 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.16 | 154 | 176 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.637 | 154 | 181 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 156 | 176 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MALDAALDVC SKTPSPSPPT VDSSARGGRR SKRRAGSPAS DGGGGVDGND QPEQEEYLAQ 60 CLLMLSHGLP GDGAAPPSAA AKAKAIQQQH QHGRYECSVC GKVYTSYQAL GGHKTSHRKP 120 PVVAPAPAPA PGGEADASLS GGTAHAAAEK EKTHRCSVCK RTFQSGQALG GHKRLHYEAK 180 AKDADAVAAT AVLQNLDLNL PAEGAPPEPK RARTMLLLA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.127435 | 0.0 | ovary |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G089557 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G089557_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT070151 | 0.0 | BT070151.1 Zea mays full-length cDNA clone ZM_BFc0132P01 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001148240.2 | 1e-157 | zinc finger, C2H2 type family protein | ||||
Refseq | XP_020396776.1 | 1e-157 | zinc finger protein AZF1 | ||||
TrEMBL | C0PPD2 | 1e-155 | C0PPD2_MAIZE; Zinc finger protein AZF1 | ||||
STRING | GRMZM2G089557_P01 | 1e-156 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10028 | 23 | 35 | Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49930.1 | 6e-26 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G089557_P01 |