PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G089501_P03
Common NameLOC100191909
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 478aa    MW: 51486.9 Da    PI: 8.1492
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G089501_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.78.8e-18194243255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  GRMZM2G089501_P03 194 RSKHSATEQRRRSKINDRFQILRELLPHS----DQKRDKATFLLEVIEYIRFLQ 243
                        889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.6E-24189263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-19190260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.78192242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.37E-16194247No hitNo description
PfamPF000103.3E-15194243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-13198248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MYIYTGNFLL KTHDFLQPLD QKPGAPPEPS PLPASAAESR HQPQQQVVVA NQHALPLPGG  60
VGTFSISPAP VSVALPAAVV KSEPPFVLWG QPAATLHPGA RGHQQQWALP FAGAGQVRLP  120
PQQAPPDRKG RGGAGGGVME SGSRSSGGAG FDDDDGLTTR REVSSSLQDL TVRVDRKGGS  180
CSDGGTDQRP NTPRSKHSAT EQRRRSKIND RFQILRELLP HSDQKRDKAT FLLEVIEYIR  240
FLQEKVQKYE ATFPEWNQEN AKMLPWSNMY FRSFWKNAQS KGQISGDSPP DPSHFMRNGS  300
SPGSNFTGKL DDNHNIVTSA AASGAQDQVE TDHMASGCYR SAETTANFTN NAMSQSQPQW  360
TGPSPVDDSA VNSETLNNQQ LVIDEGTIRV SSNYSQELLN SLTHALQSSG VDLSQANISV  420
QINMGKRAAK RPAAGVSSNS KEPADPASSN ELGHQLTLSG AGADCLSHAT KRHKRSNS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1183120.0ear| endosperm| glume| meristem| ovary| pericarp| pollen| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G089501
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G089501_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0341600.0BT034160.1 Zea mays full-length cDNA clone ZM_BFc0028P04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008650818.10.0putative HLH DNA-binding domain superfamily protein isoform X1
TrEMBLB4FAM20.0B4FAM2_MAIZE; Uncharacterized protein
STRINGGRMZM2G089501_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.13e-60BES1-interacting Myc-like protein 2