PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G089501_P01
Common NameLOC100191909
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 514aa    MW: 55080.9 Da    PI: 7.8416
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G089501_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.69.8e-18230279255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  GRMZM2G089501_P01 230 RSKHSATEQRRRSKINDRFQILRELLPHS----DQKRDKATFLLEVIEYIRFLQ 279
                        889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.3E-24225299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-19226296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.78228278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.65E-16230283No hitNo description
PfamPF000103.6E-15230279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-13234284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MGIQGNKAAT HEHDFLSLYA AAAAKDAPLL LHDSKAPPPS QGNFLLKTHD FLQPLDQKPG  60
APPEPSPLPA SAAESRHQPQ QQVVVANQHA LPLPGGVGTF SISPAPVSVA LPAAVVKSEP  120
PFVLWGQPAA TLHPGARGHQ QQWALPFAGA GQVRLPPQQA PPDRKGRGGA GGGVMESGSR  180
SSGGAGFDDD DGLTTRREVS SSLQDLTVRV DRKGGSCSDG GTDQRPNTPR SKHSATEQRR  240
RSKINDRFQI LRELLPHSDQ KRDKATFLLE VIEYIRFLQE KVQKYEATFP EWNQENAKML  300
PWSNMYFRSF WKNAQSKGQI SGDSPPDPSH FMRNGSSPGS NFTGKLDDNH NIVTSAAASG  360
AQDQVETDHM ASGCYRSAET TANFTNNAMS QSQPQWTGPS PVDDSAVNSE TLNNQQLVID  420
EGTIRVSSNY SQELLNSLTH ALQSSGVDLS QANISVQINM GKRAAKRPAA GVSSNSKEPA  480
DPASSNELGH QLTLSGAGAD CLSHATKRHK RSNS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1183120.0ear| endosperm| glume| meristem| ovary| pericarp| pollen| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G089501
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G089501_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0539890.0BT053989.1 Zea mays full-length cDNA clone ZM_BFc0097D18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008650818.10.0putative HLH DNA-binding domain superfamily protein isoform X1
TrEMBLA0A1D6I6H70.0A0A1D6I6H7_MAIZE; Transcription factor BIM2
STRINGGRMZM2G089501_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.17e-60BES1-interacting Myc-like protein 2