PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G089406_P01 | ||||||||
Common Name | LOC100279451, ZEAMMB73_669752 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB_related | ||||||||
Protein Properties | Length: 1533aa MW: 165682 Da PI: 6.0654 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.7 | 7.5e-10 | 669 | 711 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE +++ ++ +++G++ +++Ia+ + +++ +c+++++k+ GRMZM2G089406_P01 669 PWTQEEKKIFMELLAKFGKD-FSKIASFIT-HKSTADCVEFYYKH 711 8*****************99.********9.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.27E-14 | 653 | 714 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 15.771 | 665 | 716 | IPR017884 | SANT domain |
SMART | SM00717 | 4.5E-10 | 666 | 714 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-7 | 667 | 713 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.9E-8 | 668 | 711 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 12.6 | 875 | 926 | IPR017884 | SANT domain |
SMART | SM00717 | 4.5E-6 | 876 | 924 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.36E-9 | 879 | 926 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.69E-4 | 880 | 918 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 1533 aa Download sequence Send to blast |
MRGSYRRSPY RGGYGSDFSR NHPEQPPPPP PRRSPLRSVA VPICYDSPGN RVDRGDRDNL 60 PRVTPWRRRE SRSEPADAVG LLSVGQTTRL SASGKEASAQ PLSVSGPHGT EDEAPRKKAR 120 LGWGQGLAKY EKQKVQGPVD PAEAVADGSP ADGELKTTSP VPVPVHPVPV PVPYVAPAPP 180 AAPVLAPAPA PSAAPALLSA PMQCSSPVTG PPYCSSAPED KSCEMMPNAV TNSTKDVLEA 240 DDTTFNNEFL IKLDQLGDDP VISLGNMLVE LIQHEDSCSG DSNGPTSTYK LLLLKESISK 300 EIEKTELEID SLEGELKSVN TEAATTLEGS PTGVTHTENL SPSSGTSKVP GSVEICDTSD 360 MIKEPGELIG SPKVPVVQYD DVKSADMMEI ETAPVHNAKT VPSEAGAISP VVAEGKACAA 420 ADLSSLKASE EAGSQNDIDN GRLETSSRQA NADSMKIEIS DDLPVKKWTY HDHKSDLLSS 480 VTSANSAIAK EINEVLFKSL PADTPRLDLF ASSHLLSQRK SDLIVKERLG VCKTRLRLKE 540 QMLTMKFKAY CHLWKDVQLF SANKQRSKSN KRTDQSNRTS QIGSQRQRSS NRSRLTMPAG 600 NLSTFSTPEM SDVAMRLFSE FKIKRCRNYL KMPALIIDEK EKEWLKLMNK NGLVEDPVLV 660 EKERVMINPW TQEEKKIFME LLAKFGKDFS KIASFITHKS TADCVEFYYK HHKSDSFREV 720 KKLLDLRQQQ PTSNFLGAKS GHKWNPESNA ASLDMLGVAS VVAAHGLEYA KQVEKISAKS 780 LIRTAYGPNV TSVANKSSDK ECIDHVPLHE RESVAADVLA GICGTLSPDG MGSCITSSAD 840 PGQKISMKRV EHVLSQENDK TVEEEDTLSD QECEVDPVDW NDDEKSIFIE AMNNYGKDFA 900 RISSCVKSKS YEQCKVFFSK ARKSLGLDLI HQGAADVSMP ASDTNGGKSD TDEACAVEMD 960 SAICSTQSCS KIAMDVCPTE GAIGGPNSVI ISKQAEAYIS NGCNADVKIE EDEKVADKNC 1020 SIVDAKRSSD ATHEAGPIDI NCPGSTDKLQ GTDDVVDLVN MHSNSGISSS AKHAVAIHSE 1080 MRSTLHSVEV LQTDKGEGTG TDLSWVEECS HHALDNTPMK NGNSGAPAFL ASDSGIKDNV 1140 RISNITAAST VSPAFTSSYQ HSVPGDMPLP KPKPLVTPLT PKDLMPVQFS SVLPDPTAIR 1200 FEGIASITTP NFEDTGNRVS GALGAKEMSK YPAFRDPSGN QQSTLFCNID GYMNHRLTTE 1260 LPFFSERTAS GTVNTSQADR LTQTKLQNGR SSSLCLQNNS DGIQWPRDHE GGLEGSLRPC 1320 SRNTSSEGDE QQKRPGDVKL FGQILSHQST LQSSGLSCNG NKSKPPSPKI DTSVRSMNNP 1380 MDRVVCSSRP GTTPHLGLEE RLARCYGHLD GSTAQPEPLL VMAKRQRSLA GVQFYSAKNG 1440 TLGVLPDYQQ PSTQPQQSDP KRVERLSDPQ KRNVLELISG FQQPGRVARF GGAGILVSGN 1500 VSDPVAAALK AQYGPGSKIM GSDVDPWTDI GSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4a69_C | 3e-14 | 627 | 718 | 4 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
4a69_D | 3e-14 | 627 | 718 | 4 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.139459 | 0.0 | cell lignification| ear| endosperm| meristem| ovary| pericarp| pollen| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G089406 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G089406_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU943148 | 0.0 | EU943148.1 Zea mays clone 1570595 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008654802.1 | 0.0 | uncharacterized protein LOC100279451 isoform X1 | ||||
Refseq | XP_008654803.1 | 0.0 | uncharacterized protein LOC100279451 isoform X1 | ||||
Refseq | XP_020397653.1 | 0.0 | uncharacterized protein LOC100279451 isoform X1 | ||||
TrEMBL | A0A1D6FV45 | 0.0 | A0A1D6FV45_MAIZE; Putative MYB DNA-binding domain superfamily protein | ||||
STRING | GRMZM2G089406_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6299 | 35 | 49 | Representative plant | OGRP3215 | 17 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 1e-81 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G089406_P01 |