PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G088524_P01 | ||||||||
Common Name | LOC100216850, MYBR32 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB_related | ||||||||
Protein Properties | Length: 281aa MW: 30838.8 Da PI: 8.7714 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.5 | 4.1e-15 | 98 | 142 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++d+ +qlG+g+W+ I++ + ++Rt+ q+ s+ qky GRMZM2G088524_P01 98 PWTEEEHRKFLDGLRQLGKGDWRGISKGFVTTRTATQVASHAQKY 142 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.86 | 90 | 147 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.0E-17 | 93 | 147 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.8E-18 | 94 | 146 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.9E-10 | 95 | 145 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.6E-11 | 96 | 141 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.60E-10 | 98 | 143 | No hit | No description |
Pfam | PF00249 | 3.3E-12 | 98 | 142 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MDMDRPEEEG QQRRETMTPV LLRLFGVDVH RGGGSGEPEE SPMDLRKSSS MPDLTINPLL 60 SPEEKEGCKG YASDDAELAS GQQKRRRRKA QDRKKGIPWT EEEHRKFLDG LRQLGKGDWR 120 GISKGFVTTR TATQVASHAQ KYFLRQTNPG MKKRRASLFD VGIADYKDNQ VPGPQSIVAA 180 KPAPTQEIIH TDRGDVPIPR YRGLGEILGS NMQVNQLTDY YYFNKNSHVP AGTSLSMASG 240 LETASTVDSL ELSIAVNGLE LSIAPPSRCV CGGAAGAIKV L |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 83 | 88 | KRRRRK |
2 | 83 | 94 | KRRRRKAQDRKK |
3 | 84 | 94 | RRRRKAQDRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.7675 | 0.0 | endosperm| glume| shoot| silk |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G088524 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed mainly in roots, leaves, and senescent leaves at similar levels. {ECO:0000269|PubMed:12172034}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000269|PubMed:12172034}. | |||||
UniProt | Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q7XC51}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G088524_P01 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by sucrose. Slightly repressed by gibberellic acid (GA). {ECO:0000269|PubMed:12172034}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT037447 | 0.0 | BT037447.1 Zea mays full-length cDNA clone ZM_BFb0169J18 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001136714.1 | 0.0 | uncharacterized protein LOC100216850 | ||||
Swissprot | B8BI93 | 8e-82 | MYBS2_ORYSI; Transcription factor MYBS2 | ||||
Swissprot | Q7XC51 | 8e-82 | MYBS2_ORYSJ; Transcription factor MYBS2 | ||||
TrEMBL | B4FK09 | 0.0 | B4FK09_MAIZE; MYB-related transcription factor | ||||
STRING | GRMZM2G088524_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10464 | 30 | 43 | Representative plant | OGRP14532 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61620.1 | 2e-30 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G088524_P01 |
Entrez Gene | 100216850 |
Publications ? help Back to Top | |||
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