PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G088443_P02 | ||||||||
Common Name | LOC100382374 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 107aa MW: 11448 Da PI: 11.7737 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30 | 9.4e-10 | 76 | 101 | 4 | 29 |
HHHHHHHHHHHHHHHHHHHHHCTSCC CS HLH 4 ahnerErrRRdriNsafeeLrellPk 29 h+e+ErrRR+riN +++Lr+++P GRMZM2G088443_P02 76 VHSEAERRRRERINAHLATLRRMVPD 101 59***********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.83E-8 | 63 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.582 | 72 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-7 | 76 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-8 | 76 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
MMPGSMAARQ PLQGKQELQP YDGRDPSALG AGGSPVLLPR QQESAAPPAV RVAPPPDMSS 60 SSGSGRSATE ARALKVHSEA ERRRRERINA HLATLRRMVP DTRQVGV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 80 | 85 | ERRRRE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.20666 | 0.0 | meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G088443 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G088443_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT064087 | 1e-174 | BT064087.1 Zea mays full-length cDNA clone ZM_BFc0137C17 mRNA, complete cds. | |||
GenBank | KJ726869 | 1e-174 | KJ726869.1 Zea mays clone pUT3410 bHLH transcription factor (bHLH104) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020405444.1 | 6e-67 | putative HLH DNA-binding domain superfamily protein isoform X2 | ||||
TrEMBL | C0P718 | 2e-65 | C0P718_MAIZE; BHLH transcription factor | ||||
STRING | GRMZM2G088443_P01 | 3e-66 | (Zea mays) |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G088443_P02 |