PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G088443_P01 | ||||||||
Common Name | bHLH104, LOC100382374 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 261aa MW: 27892.7 Da PI: 10.73 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.1 | 9.8e-11 | 76 | 121 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+e+ErrRR+riN +++Lr+++P + ++Ka+ L ++ve +k L GRMZM2G088443_P01 76 VHSEAERRRRERINAHLATLRRMVPDT-----RQMDKATLLARVVEQVKLL 121 59************************8.....68*******9999987766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.23E-13 | 63 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.596 | 72 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-12 | 76 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-8 | 76 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.4E-10 | 78 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 4.78E-5 | 165 | 235 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 1.2E-5 | 165 | 212 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MMPGSMAARQ PLQGKQELQP YDGRDPSALG AGGSPVLLPR QQESAAPPAV RVAPPPDMSS 60 SSGSGRSATE ARALKVHSEA ERRRRERINA HLATLRRMVP DTRQMDKATL LARVVEQVKL 120 LKRKASEAAT TTTQSTPLPP ETDEVSIELH TGDAGADRSV YIRASISCAD RPDLVAGLAQ 180 AFHGLRLKTV RANMTSLGGR ARHVFVLCME EGWGSAGAGA GASLRSLKEA VRQALARVAS 240 PETAYGSSPF QSKRQMILES H |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 80 | 85 | ERRRRE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.44287 | 0.0 | shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G088443 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G088443_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT064087 | 0.0 | BT064087.1 Zea mays full-length cDNA clone ZM_BFc0137C17 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001168590.1 | 0.0 | uncharacterized protein LOC100382374 | ||||
Refseq | XP_020405443.1 | 0.0 | putative HLH DNA-binding domain superfamily protein isoform X1 | ||||
Refseq | XP_020405444.1 | 0.0 | putative HLH DNA-binding domain superfamily protein isoform X2 | ||||
TrEMBL | C0P718 | 0.0 | C0P718_MAIZE; BHLH transcription factor | ||||
STRING | GRMZM2G088443_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3347 | 36 | 78 | Representative plant | OGRP377 | 15 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41130.1 | 8e-23 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G088443_P01 |
Entrez Gene | 100382374 |