PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G088440_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | TCP | ||||||||
Protein Properties | Length: 182aa MW: 21139.2 Da PI: 9.1048 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 66.1 | 1.2e-20 | 1 | 54 | 22 | 71 |
TCP 22 vRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....ssssas 71 +Rls+ +a++fF+Lqd+LGfdk+ kt++WLl q+kpai+ l++ ++ s++ GRMZM2G088440_P01 1 MRLSVGVAREFFKLQDRLGFDKANKTVNWLLAQSKPAIDRLNRIigveKTASQQ 54 8****************************************9996655222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 22.766 | 1 | 41 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 4.1E-18 | 1 | 58 | IPR005333 | Transcription factor, TCP |
SMART | SM00271 | 1.8E-17 | 39 | 97 | IPR001623 | DnaJ domain |
PROSITE profile | PS50076 | 18.486 | 40 | 105 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 2.7E-17 | 42 | 60 | IPR001623 | DnaJ domain |
Gene3D | G3DSA:1.10.287.110 | 4.3E-23 | 43 | 130 | IPR001623 | DnaJ domain |
SuperFamily | SSF46565 | 7.85E-22 | 43 | 127 | IPR001623 | DnaJ domain |
CDD | cd06257 | 9.21E-18 | 44 | 94 | IPR001623 | DnaJ domain |
Pfam | PF00226 | 3.1E-21 | 44 | 102 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 2.7E-17 | 60 | 75 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 2.7E-17 | 77 | 97 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 2.7E-17 | 97 | 116 | IPR001623 | DnaJ domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MRLSVGVARE FFKLQDRLGF DKANKTVNWL LAQSKPAIDR LNRIIGVEKT ASQQEIKKVY 60 HKLALRLHPD KNPGDEETKE KFQLLQKVIS ILGDAEKRAL YDETGITDDD ALVGEAANNL 120 QEYFRTMYKK VMEANIEEFE VKYRGSDSEK MDLKELYTKY KGNMNRNSYL LYHIVKSETV 180 LL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2dmx_A | 2e-16 | 44 | 106 | 14 | 77 | DnaJ homolog subfamily B member 8 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.94447 | 0.0 | cell culture| embryo| leaf| meristem| ovary| pericarp| pollen| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G088440 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in leaves, flowers and siliques, and to lower extent in roots. {ECO:0000269|Ref.1}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Have a continuous role in plant development probably in the structural organization of compartments. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G088440_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT041769 | 0.0 | BT041769.1 Zea mays full-length cDNA clone ZM_BFb0049O18 mRNA, complete cds. | |||
GenBank | BT068155 | 0.0 | BT068155.1 Zea mays full-length cDNA clone ZM_BFb0066J15 mRNA, complete cds. | |||
GenBank | EU964711 | 0.0 | EU964711.1 Zea mays clone 281006 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001150767.1 | 1e-77 | chaperone protein dnaJ 6 | ||||
Swissprot | Q9FL54 | 5e-52 | DNAJ6_ARATH; Chaperone protein dnaJ 6 | ||||
TrEMBL | A0A3L6FXZ5 | 2e-95 | A0A3L6FXZ5_MAIZE; Chaperone protein dnaJ 6 | ||||
STRING | GRMZM2G088440_P01 | 1e-131 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.1 | 1e-12 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G088440_P01 |
Publications ? help Back to Top | |||
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