PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G088413_P01
Common NameLOC103643730, Zm.149420
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 332aa    MW: 38012.1 Da    PI: 10.4421
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G088413_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.19e-20361171299
                        HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         + rlv+p kfa+++ gk e+   +tle++ g +++v++   ++ gr+v+++GW++Fv+a++Lk  D +vFk+dg +++ ++v vf+ 
  GRMZM2G088413_P01  36 FHERLVIPVKFAKNFRGKIER--SITLESLGGCTFDVQV--AQNLGRIVFQSGWESFVSAHDLKMCDLLVFKYDG-MSR-MKVLVFDP 117
                        4678********999777555..5***************..********************************98.444.68888875 PP
2B341.42.5e-132643303699
                        EEEEETTS-EEEEEE....EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3  36 ltledesgrsWevkliy..rkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          + + +g+sW+v +++  +k +g+   l++GW +F+++n L+ gD+++F+  ++++ +++v+++rk
  GRMZM2G088413_P01 264 ALILQCHGKSWQVMYCIevWKDRGEsKRLRNGWAQFARDNYLQLGDICLFEPLKTKKCTMNVHIIRK 330
                        3445669********8888666665599***********************88888888*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-2221120IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-2224124IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.33725118IPR003340B3 DNA binding domain
CDDcd100174.53E-2126116No hitNo description
SMARTSM010197.2E-1128118IPR003340B3 DNA binding domain
PfamPF023623.6E-1737116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.0E-18225331IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-17226331IPR015300DNA-binding pseudobarrel domain
CDDcd100176.58E-14229329No hitNo description
SMARTSM010190.15231331IPR003340B3 DNA binding domain
PROSITE profilePS5086311.674232331IPR003340B3 DNA binding domain
PfamPF023626.1E-12243330IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MRKPSKGRKE RDVIYHRNDH SDDRGKHFFK ILIGEFHERL VIPVKFAKNF RGKIERSITL  60
ESLGGCTFDV QVAQNLGRIV FQSGWESFVS AHDLKMCDLL VFKYDGMSRM KVLVFDPSGC  120
EKVPPFFVTK NAMSGGRKRE GPLDISSSDA NLPMKTPETK KKAWKQRDRS RISIRSSRSL  180
SSSSGGMTAS EDDEAHSVPS YVLPRHTSLD TMQKRKVKER LQAICSEIPI YVLVVKNTNI  240
SGRSRAMVFS RKYPDVCLPS KSGALILQCH GKSWQVMYCI EVWKDRGESK RLRNGWAQFA  300
RDNYLQLGDI CLFEPLKTKK CTMNVHIIRK KE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.330721e-168embryo| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G088413
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G088413_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008665124.10.0putative B3 domain-containing protein Os03g0621600
TrEMBLA0A317Y8C50.0A0A317Y8C5_MAIZE; Putative B3 domain-containing protein
STRINGGRMZM2G088413_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Representative plantOGRP5872421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-29B3 family protein