PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G088309_P01

Common Name

ZmDL1

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

YABBY

Protein Properties

Length: 205aa MW: 23047.5 Da PI: 8.4949

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G088309_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	135	9.1e-42	1	147	1	162
YABBY 1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesa 92 +d++s+se++Cyv+C++Cnt+lav vP + l+ +vtv+CGhC +l l+ + ++ s d+ l + + + n+ ++ GRMZM2G088309_P01 1 MDMVSQSEHLCYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNNLSY--LSPRPPMVQPLSPTDHPLGPFQ--------CQGPCNDCRR--- 79 57899***********************************99865..3333322222222222333222........2222233333... PP YABBY 93 stsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162 +++ s +++e +pr+p v++PPek+ r Psaynrf++eeiqrika+ Pdi hreafs+aaknWa GRMZM2G088309_P01 80 --NQPLPLASPSSTELSPRMPFVVKPPEKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWAK 147 ..333333466778999*************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.4E-46	6	148	IPR006780	YABBY protein
SuperFamily	SSF47095	2.36E-8	93	149	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.1E-5	102	149	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MDMVSQSEHL CYVRCTYCNT VLAVGVPCKR LMDTVTVKCG HCNNLSYLSP RPPMVQPLSP 60 TDHPLGPFQC QGPCNDCRRN QPLPLASPSS TELSPRMPFV VKPPEKKHRL PSAYNRFMRE 120 EIQRIKAAKP DIPHREAFSM AAKNWAKCDP RCSTAASTET SNSAPAEPRV VPTPQLTEPR 180 FDLEDRAKGQ VIESFDIFKH IERSI

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.1242	0.0	ear\| endosperm\| meristem\| shoot\| silk\| tassel

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G088309

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Detected during flower and leaf development. Expression in the flower meristem in the early stage of flower development. When carpel primordia begin to form, specific and uniform expression in carpel primordia. Expression in the central region of the leaf plastochron 1 (P1) primordia. Detected up to P4 stage, hardly detected in the P5 leaves. {ECO:0000269\|PubMed:14729915}.

Functional Description ? help Back to Top
Source	Description
UniProt	Regulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269\|PubMed:14729915}.

Function -- GeneRIF ? help Back to Top
Results suggest that DL-related genes are functionally conserved within the grass family. [PMID: 19556707]

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G088309_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB470270	0.0	AB470270.1 Zea mays ZmDL1 mRNA for DL related protein, complete cds.
GenBank	BT061148	0.0	BT061148.1 Zea mays full-length cDNA clone ZM_BFb0116A21 mRNA, complete cds.
GenBank	EU960556	0.0	EU960556.1 Zea mays clone 226122 protein DROOPING LEAF mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001148730.1	1e-152	uncharacterized protein LOC100282346
Swissprot	Q76EJ0	1e-111	YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBL	B6T6E1	1e-150	B6T6E1_MAIZE; C2C2-YABBY transcription factor
STRING	GRMZM2G088309_P02	1e-149	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69180.1	1e-51	YABBY family protein

Link Out ? help Back to Top
Phytozome	GRMZM2G088309_P01
Entrez Gene	100282346

Publications ? help Back to Top
Alexandrov NN, et al. Insights into corn genes derived from large-scale cDNA sequencing. Plant Mol. Biol., 2009. 69(1-2): p. 179-94 [PMID:18937034] Ishikawa M, et al. The spatial expression patterns of DROOPING LEAF orthologs suggest a conserved function in grasses. Genes Genet. Syst., 2009. 84(2): p. 137-46 [PMID:19556707]