PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G088140_P03 | ||||||||
Common Name | pco120282(609), ZEAMMB73_077557 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 376aa MW: 39989.7 Da PI: 7.4988 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 67.6 | 2.1e-21 | 279 | 341 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e elk++rrkq+NRe+ArrsR+RK+ae+eeL++++++L++eN +L++e+++++ke+++l s + GRMZM2G088140_P03 279 EHELKKQRRKQSNRESARRSRLRKQAECEELAQRADVLKQENASLRDEVNRIRKEYEELLSRN 341 679********************************************************9976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 1.5E-27 | 1 | 89 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 6.4E-32 | 128 | 252 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.7E-17 | 273 | 337 | No hit | No description |
Pfam | PF00170 | 1.1E-19 | 279 | 341 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 3.4E-20 | 279 | 343 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.208 | 281 | 344 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.25E-11 | 282 | 338 | No hit | No description |
CDD | cd14702 | 3.29E-25 | 284 | 334 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 286 | 301 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 376 aa Download sequence Send to blast |
MGSSGADTPS KEQQPPATSG AAIPPVYPDW SSFQAYPPIP PHGFFPSPVA SSPQGHPFMW 60 GAQAMIPPYG TPPPYVMYPP GVYAHPSMPP GAHPFTPYAI TSPNGNADAT GTTVAAGNTD 120 GKPSEGKDKS PTKRSKGSLG SLNMLTGKNP SEHGKSSGAS GNGVTSQSGE SGSDSSSEGS 180 EGNSHNDSHH KESGQEHDGD VRSSRNGVSR LQSEGKLNQA MAILPIPSSG PATDPTTNLN 240 IGMDYWANTA SSAPAIHGKA TSTTVPGAVV PAEQWTQDEH ELKKQRRKQS NRESARRSRL 300 RKQAECEELA QRADVLKQEN ASLRDEVNRI RKEYEELLSR NNSLKEKLEG KQHKTDEAGL 360 NNKLQHSGDD SQKKGN |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 295 | 301 | RRSRLRK |
2 | 295 | 302 | RRSRLRKQ |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.13397 | 0.0 | embryo| meristem| pedicel| pericarp| tassel |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G088140 |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in roots and at lower levels in stems and leaves. {ECO:0000269|Ref.1}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may be involved in responses to fungal pathogen infection and abiotic stresses. {ECO:0000269|Ref.1}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G088140_P03 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced during incompatible interaction with the fungal pathogen Puccinia striiformis (Ref.1). Induced by abscisic acid (ABA), ethylene, cold stress, salt stress and wounding (Ref.1). {ECO:0000269|Ref.1}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT036032 | 0.0 | BT036032.1 Zea mays full-length cDNA clone ZM_BFb0092L16 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001132261.1 | 0.0 | uncharacterized protein LOC100193697 | ||||
Refseq | XP_020400477.1 | 0.0 | uncharacterized protein LOC100193697 isoform X1 | ||||
Refseq | XP_020400478.1 | 0.0 | uncharacterized protein LOC100193697 isoform X1 | ||||
Refseq | XP_020400479.1 | 0.0 | uncharacterized protein LOC100193697 isoform X1 | ||||
Swissprot | B6E107 | 0.0 | BZP1B_WHEAT; bZIP transcription factor 1-B | ||||
TrEMBL | B4FFZ4 | 0.0 | B4FFZ4_MAIZE; Uncharacterized protein | ||||
TrEMBL | K4JRP3 | 0.0 | K4JRP3_MAIZE; BZIP-type transcription factor (Fragment) | ||||
STRING | GRMZM2G088140_P03 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G32150.1 | 2e-87 | basic region/leucine zipper transcription factor 68 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G088140_P03 |
Entrez Gene | 100193697 |
Publications ? help Back to Top | |||
---|---|---|---|
|