PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G088140_P02
Common Namepco120282(609), ZEAMMB73_077557
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bZIP
Protein Properties Length: 376aa    MW: 39989.7 Da    PI: 7.4988
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G088140_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_167.62.1e-21279341163
                        XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                        e elk++rrkq+NRe+ArrsR+RK+ae+eeL++++++L++eN +L++e+++++ke+++l s +
  GRMZM2G088140_P02 279 EHELKKQRRKQSNRESARRSRLRKQAECEELAQRADVLKQENASLRDEVNRIRKEYEELLSRN 341
                        679********************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.5E-27189IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165966.4E-32128252No hitNo description
Gene3DG3DSA:1.20.5.1702.7E-17273337No hitNo description
PfamPF001701.1E-19279341IPR004827Basic-leucine zipper domain
SMARTSM003383.4E-20279343IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.208281344IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.25E-11282338No hitNo description
CDDcd147023.29E-25284334No hitNo description
PROSITE patternPS000360286301IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MGSSGADTPS KEQQPPATSG AAIPPVYPDW SSFQAYPPIP PHGFFPSPVA SSPQGHPFMW  60
GAQAMIPPYG TPPPYVMYPP GVYAHPSMPP GAHPFTPYAI TSPNGNADAT GTTVAAGNTD  120
GKPSEGKDKS PTKRSKGSLG SLNMLTGKNP SEHGKSSGAS GNGVTSQSGE SGSDSSSEGS  180
EGNSHNDSHH KESGQEHDGD VRSSRNGVSR LQSEGKLNQA MAILPIPSSG PATDPTTNLN  240
IGMDYWANTA SSAPAIHGKA TSTTVPGAVV PAEQWTQDEH ELKKQRRKQS NRESARRSRL  300
RKQAECEELA QRADVLKQEN ASLRDEVNRI RKEYEELLSR NNSLKEKLEG KQHKTDEAGL  360
NNKLQHSGDD SQKKGN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1295301RRSRLRK
2295302RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.133970.0embryo| meristem| pedicel| pericarp| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G088140
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in roots and at lower levels in stems and leaves. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in responses to fungal pathogen infection and abiotic stresses. {ECO:0000269|Ref.1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G088140_P02
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during incompatible interaction with the fungal pathogen Puccinia striiformis (Ref.1). Induced by abscisic acid (ABA), ethylene, cold stress, salt stress and wounding (Ref.1). {ECO:0000269|Ref.1}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0360320.0BT036032.1 Zea mays full-length cDNA clone ZM_BFb0092L16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001132261.10.0uncharacterized protein LOC100193697
RefseqXP_020400477.10.0uncharacterized protein LOC100193697 isoform X1
RefseqXP_020400478.10.0uncharacterized protein LOC100193697 isoform X1
RefseqXP_020400479.10.0uncharacterized protein LOC100193697 isoform X1
SwissprotB6E1070.0BZP1B_WHEAT; bZIP transcription factor 1-B
TrEMBLB4FFZ40.0B4FFZ4_MAIZE; Uncharacterized protein
TrEMBLK4JRP30.0K4JRP3_MAIZE; BZIP-type transcription factor (Fragment)
STRINGGRMZM2G088140_P030.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21473796
Representative plantOGRP7001767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.12e-87basic region/leucine zipper transcription factor 68
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  2. Appels R, et al.
    Shifting the limits in wheat research and breeding using a fully annotated reference genome.
    Science, 2018.
    [PMID:30115783]