PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G088005_P01
Common NameLOC103626074, Zm.103788
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 440aa    MW: 48872.1 Da    PI: 6.0031
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G088005_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.73.5e-10171234147
                        TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwqky 47 
                        r+ WT+e++e+lv+a   + ++            W  Ia+t +       +Rt+kq+k++w +y
  GRMZM2G088005_P01 171 RLEWTKEDEEKLVNAWFIHSNDpisgnnksgssFWGQIAATYNstsdpiRHRTAKQLKDHWVTY 234
                        789**********************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.5E-7166236IPR009057Homeodomain-like
PROSITE profilePS500906.922166235IPR017877Myb-like domain
SuperFamilySSF466894.11E-6168237IPR009057Homeodomain-like
SMARTSM007171.3E-5170237IPR001005SANT/Myb domain
PfamPF002494.1E-6171234IPR001005SANT/Myb domain
CDDcd001671.51E-4173234No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MSGWSPDLNT FTDLLQSDGS PTTLSLDESS SLHRRSDVSA SLPRALFPAA RPPPYPYPYH  60
LYQYPPSSYG QPPTSQAGIQ ASFPVSLYAP PPPAADGSQA SFQIPPYAPP PYAPPPYGVP  120
PYAPYAPPPY GAPHPYAPPT YGAPPPVAPL SVGSENQAEE NPVPKEKRPK RLEWTKEDEE  180
KLVNAWFIHS NDPISGNNKS GSSFWGQIAA TYNSTSDPIR HRTAKQLKDH WVTYNREVTK  240
FNGFYLQEER LRQSGADDAM VMDAAMARFE GKMGHPFKRH HWWQVVCYEP KWSAKHGLGS  300
GSDSTANKRT RLGVSGEYSS GGTEDTEEEV PRTVGRDRAK AAARKTKTKG KGKEATSSES  360
TSEAFKMKNL WGGLVKAKLL KQWNILKGRS TRDMDPAERR THGRAVKMVE KELGLLDDEE  420
EEPEAEREEE EDEDEIEESD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1037880.0endosperm| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G088005
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G088005_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5176000.0EF517600.2 Zea mays clone BACs ZMMBBb0345O22, ZMMBBc0294D02, ZMMBBb0103L15, ZMMBBb0622H01, and ZMMBBb0335C07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008644673.10.0uncharacterized protein LOC103626074
TrEMBLA0A3L6EIR90.0A0A3L6EIR9_MAIZE; Glutathione S-transferase T3
STRINGGRMZM2G088005_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3263337