PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G088005_P01 | ||||||||
Common Name | LOC103626074, Zm.103788 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB_related | ||||||||
Protein Properties | Length: 440aa MW: 48872.1 Da PI: 6.0031 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.7 | 3.5e-10 | 171 | 234 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwqky 47 r+ WT+e++e+lv+a + ++ W Ia+t + +Rt+kq+k++w +y GRMZM2G088005_P01 171 RLEWTKEDEEKLVNAWFIHSNDpisgnnksgssFWGQIAATYNstsdpiRHRTAKQLKDHWVTY 234 789**********************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.5E-7 | 166 | 236 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.922 | 166 | 235 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 4.11E-6 | 168 | 237 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-5 | 170 | 237 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-6 | 171 | 234 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.51E-4 | 173 | 234 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
MSGWSPDLNT FTDLLQSDGS PTTLSLDESS SLHRRSDVSA SLPRALFPAA RPPPYPYPYH 60 LYQYPPSSYG QPPTSQAGIQ ASFPVSLYAP PPPAADGSQA SFQIPPYAPP PYAPPPYGVP 120 PYAPYAPPPY GAPHPYAPPT YGAPPPVAPL SVGSENQAEE NPVPKEKRPK RLEWTKEDEE 180 KLVNAWFIHS NDPISGNNKS GSSFWGQIAA TYNSTSDPIR HRTAKQLKDH WVTYNREVTK 240 FNGFYLQEER LRQSGADDAM VMDAAMARFE GKMGHPFKRH HWWQVVCYEP KWSAKHGLGS 300 GSDSTANKRT RLGVSGEYSS GGTEDTEEEV PRTVGRDRAK AAARKTKTKG KGKEATSSES 360 TSEAFKMKNL WGGLVKAKLL KQWNILKGRS TRDMDPAERR THGRAVKMVE KELGLLDDEE 420 EEPEAEREEE EDEDEIEESD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.103788 | 0.0 | endosperm| meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G088005 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G088005_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF517600 | 0.0 | EF517600.2 Zea mays clone BACs ZMMBBb0345O22, ZMMBBc0294D02, ZMMBBb0103L15, ZMMBBb0622H01, and ZMMBBb0335C07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008644673.1 | 0.0 | uncharacterized protein LOC103626074 | ||||
TrEMBL | A0A3L6EIR9 | 0.0 | A0A3L6EIR9_MAIZE; Glutathione S-transferase T3 | ||||
STRING | GRMZM2G088005_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3263 | 3 | 37 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G088005_P01 |
Entrez Gene | 103626074 |