PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G087817_P01 | ||||||||
Common Name | LOC100273130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB_related | ||||||||
Protein Properties | Length: 212aa MW: 23851.6 Da PI: 9.5343 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44 | 5e-14 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 ++rWT+eE+ l+ +v+++G+g W+tI r R+ ++k++w+++ GRMZM2G087817_P01 5 KQRWTPEEEAALKAGVAKHGPGKWRTILRDSDfsallRLRSNVDLKDKWRNL 56 79***********************************99***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.892 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.65E-15 | 2 | 59 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.1E-14 | 3 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.4E-8 | 4 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.3E-10 | 5 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.79E-18 | 6 | 56 | No hit | No description |
SuperFamily | SSF46785 | 3.37E-14 | 122 | 184 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.4E-14 | 123 | 184 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00526 | 7.8E-10 | 124 | 187 | IPR005818 | Linker histone H1/H5, domain H15 |
PROSITE profile | PS51504 | 18.876 | 124 | 209 | IPR005818 | Linker histone H1/H5, domain H15 |
Pfam | PF00538 | 4.6E-9 | 129 | 184 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0000781 | Cellular Component | chromosome, telomeric region | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043047 | Molecular Function | single-stranded telomeric DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MGVPKQRWTP EEEAALKAGV AKHGPGKWRT ILRDSDFSAL LRLRSNVDLK DKWRNLSVTA 60 GGYGSREKAR MALKKGRRVV PKLTAEPMDV DEKDMDNAHD TVIDVEPLAM AFEPLPFLES 120 PDKSVARLDD LIVEAIRKLN EPSGSNKAVI SGYIEDQYWP PADFQYLLST KLKSLVNSGK 180 LIKVCPSLLP WLVFLGIKWG LQAAYYLNRD CR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.97693 | 0.0 | embryo| endosperm| meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G087817 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G087817_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT040278 | 0.0 | BT040278.1 Zea mays full-length cDNA clone ZM_BFc0075J17 mRNA, complete cds. | |||
GenBank | EU962228 | 0.0 | EU962228.1 Zea mays clone 241094 single myb histone 1 mRNA, complete cds. | |||
GenBank | JX469947 | 0.0 | JX469947.1 Zea mays subsp. mays clone UT3208 MYB-related transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001141049.1 | 1e-133 | single myb histone 2 | ||||
Swissprot | B4FT40 | 1e-134 | SMH2_MAIZE; Single myb histone 2 | ||||
TrEMBL | A0A1D6NKZ5 | 1e-131 | A0A1D6NKZ5_MAIZE; Telomere repeat-binding factor 1 | ||||
STRING | GRMZM2G087817_P02 | 1e-132 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 7e-59 | telomere repeat binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G087817_P01 |
Publications ? help Back to Top | |||
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