PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G087095_P01 | ||||||||
Common Name | MADS24, zmm24 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 240aa MW: 27335.2 Da PI: 8.3029 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.9 | 5.5e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rienk+ rqvtf+kRrng+lKKA+ELS+LCdaeva+++fs+ g+ly +ss GRMZM2G087095_P01 10 RIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSS 59 9***********************************************96 PP | |||||||
2 | K-box | 97.1 | 2.7e-32 | 83 | 173 | 9 | 99 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++ ++++ +qe+ kLk+++e Lq++qR+llGedL Ls eL qLe+q++k lk+iRs+K+++ll+++ +l++ke++lq++n+ L++kl GRMZM2G087095_P01 83 PSSDQMQNNYQEYVKLKARVEVLQHSQRNLLGEDLALLSPSELDQLENQVDKTLKQIRSRKTQVLLDELCDLKRKEQMLQDANRVLKRKLG 173 567889**********************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.02 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.9E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.65E-41 | 2 | 79 | No hit | No description |
SuperFamily | SSF55455 | 2.49E-30 | 2 | 87 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.8E-28 | 85 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.279 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MGRGKVVLQR IENKISRQVT FAKRRNGLLK KAYELSILCD AEVALVLFSH AGRLYQFSSS 60 SNLLKTLERY QRYIYASADA AVPSSDQMQN NYQEYVKLKA RVEVLQHSQR NLLGEDLALL 120 SPSELDQLEN QVDKTLKQIR SRKTQVLLDE LCDLKRKEQM LQDANRVLKR KLGEFEAEAA 180 SPPQLAWQGE GGMLSHDPPQ PEHFFQALES NPCLQPTYHT MDMNQQPVPA PGGCYPAWMS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 7e-23 | 75 | 174 | 1 | 103 | Developmental protein SEPALLATA 3 |
4ox0_B | 7e-23 | 75 | 174 | 1 | 103 | Developmental protein SEPALLATA 3 |
4ox0_C | 7e-23 | 75 | 174 | 1 | 103 | Developmental protein SEPALLATA 3 |
4ox0_D | 7e-23 | 75 | 174 | 1 | 103 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.4424 | 0.0 | ear| endosperm| glume| meristem| pericarp| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G087095 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in leaves and at low levels in roots and spikelets (rice flower). {ECO:0000269|Ref.7}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G087095_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT042406 | 0.0 | BT042406.1 Zea mays full-length cDNA clone ZM_BFb0221D10 mRNA, complete cds. | |||
GenBank | EU961799 | 0.0 | EU961799.1 Zea mays clone 238290 MADS-box transcription factor 34 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001105149.2 | 1e-179 | MADS24 | ||||
Swissprot | Q6Q9H6 | 1e-120 | MAD34_ORYSJ; MADS-box transcription factor 34 | ||||
TrEMBL | B4FZ68 | 1e-178 | B4FZ68_MAIZE; MADS transcription factor | ||||
STRING | GRMZM2G087095_P01 | 1e-179 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13618 | 26 | 30 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02310.1 | 9e-79 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G087095_P01 |