PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G087059_P01
Common NameLOC103646542, Zm.125688
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 443aa    MW: 47547 Da    PI: 9.9407
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G087059_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.5e-20216265255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa a+++a+++++g
  GRMZM2G087059_P01 216 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAAIAYDEAALRFKG 265
                        7********.**********94....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.9E-33215274IPR001471AP2/ERF domain
SMARTSM003804.8E-38216279IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-22216274IPR016177DNA-binding domain
PROSITE profilePS5103224.711216273IPR001471AP2/ERF domain
PfamPF008472.3E-13216265IPR001471AP2/ERF domain
CDDcd000182.88E-30216274No hitNo description
PRINTSPR003672.4E-11217228IPR001471AP2/ERF domain
PRINTSPR003672.4E-11239255IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MRISLRVLIS SELGTSLCTA APSLARASVR KSKSSALSLT HARIDRSSST HRRRRQINGQ  60
LTKVDPRRRH GKRPLPADEE EEEEEELPPP PAKYEQLDQE EKHHVVVSQL QAGATFSGGR  120
GSSSSSVAGP SPEAYAQYYY SARADHDASA VASALAHVIR ASPDQLPPQQ AACLYGAAGA  180
PVLRQGEGDH PQPQAAAHHH PGGHVAAEEE QGLRRHYRGV RQRPWGKWAA EIRDPKKAAR  240
VWLGTFDTAE DAAIAYDEAA LRFKGTKAKL NFPERVQGRT DLGFVVTRGI PDHHRHPRAA  300
AVNLAAMPQA QAQPHLQHGR PTVMPYPYPY PDLMQYAQLL QGGRGGGDHA AAVQQQLMMM  360
GGRGGNLPFS FSPPSSWSAP PQILDFSARQ LITQPGPPSS PAAPGGAAPS TPSSTTTASS  420
PSASASGSAW PYGGEHHRNK KDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-26215277467ATERF1
3gcc_A4e-26215277467ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1256880.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G087059
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G087059_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9436370.0EU943637.1 Zea mays clone 1661619 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008669488.10.0uncharacterized protein LOC103646542
TrEMBLA0A3L6FTB91e-174A0A3L6FTB9_MAIZE; Uncharacterized protein (Fragment)
STRINGGRMZM2G087059_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.11e-30related to AP2 6l