PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G086994_P04
Common NameC3H35, LOC100284552
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 471aa    MW: 49746.3 Da    PI: 6.7262
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G086994_P04genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.61.3e-106288127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                       ++++ C +++rtG C +G+rC+++H++
  GRMZM2G086994_P04 62 PGEADCGYYLRTGACGFGERCRYNHPR 88
                       57899********************96 PP
2zf-CCCH37.24.8e-12112137227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        +++ C ++++tGtCk+G++Ck++H++
  GRMZM2G086994_P04 112 GQPVCEYYLKTGTCKFGSNCKYHHPK 137
                        7899********************96 PP
3zf-CCCH39.97.2e-13157182227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++C+++++tG+Ck+G++CkF+H++
  GRMZM2G086994_P04 157 GEKECSYYMKTGQCKFGSTCKFHHPE 182
                        7899********************96 PP
4zf-CCCH38.51.9e-12308334127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +++++C++++rtG Ck+G +Ck++H++
  GRMZM2G086994_P04 308 PGQPECQYYMRTGDCKFGTTCKYNHPQ 334
                        5789*********************97 PP
5zf-CCCH32.11.9e-10357380427
                        ---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                         +C ++a++G+C+yG  Ck+ H++
  GRMZM2G086994_P04 357 QPCTYYAQNGYCRYGIACKYDHPM 380
                        69********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.6766189IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-56188IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-86388IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-56589IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.0016788IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-7110137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.483110138IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-10112137IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-7113139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-6115139IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-6155182IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.812155183IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-10157182IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-6158182IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4161181IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.075307335IPR000571Zinc finger, CCCH-type
SMARTSM003568.2E-6307334IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9309334IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5311335IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-4313334IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6353380IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.192353381IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-5354382IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-8357380IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-5357378IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MEPPHTEEAA AAAAGGAEGG SASPGTGLEG PMLRLGLDGG GEGEDGELGA GEEADTWLPE  60
RPGEADCGYY LRTGACGFGE RCRYNHPRDR GGTEFGGGAK NGAAQYFPER QGQPVCEYYL  120
KTGTCKFGSN CKYHHPKQDG SVQSVILNNN GFPLRPGEKE CSYYMKTGQC KFGSTCKFHH  180
PEFGGIPVTP GIYPALQSAS VPSPLTYASN WQMGRSPAVP GSYIAGSYTP MVLPSGMVPL  240
QGWSPYPAPV NHVASGGAQQ TIQAGPLYGI GHHGSSTAIA YGGTYLPYSS STGQSSNNHQ  300
EHGFPERPGQ PECQYYMRTG DCKFGTTCKY NHPQDWSTSK SNYMFSHLCL PLRPGAQPCT  360
YYAQNGYCRY GIACKYDHPM GTLGYSSSAL PLSDMPIAPY PMGFSVATLA PSPSSPEYIS  420
TKDPSINQVA SPVAAPEPVG AILPKGVFPP DTIMRTQTST SVGSSSPGGG R
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1176180.0meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G086994
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G086994_P04
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9688300.0EU968830.1 Zea mays clone 324384 zinc finger CCCH type domain-containing protein ZFN-like 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150919.10.0zinc finger CCCH type domain-containing protein ZFN-like 1
SwissprotQ5NAW20.0C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLB6TV150.0B6TV15_MAIZE; C3H transcription factor
STRINGGRMZM2G086994_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-121C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  4. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]