PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G086949_P01
Common NameZEAMMB73_806966, Zm.100279
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARF
Protein Properties Length: 958aa    MW: 105292 Da    PI: 6.443
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G086949_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.22.7e-22143257199
                        EEEE-..-HHHHTT-EE--HHH.HTT...................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 
                        f+k lt sd++++g +++p++ ae+                    ++++++ ++l+++d++ + W++++iyr++++r++lt+GW+ Fv a++
  GRMZM2G086949_P01 143 FCKNLTASDTSTHGGFSVPRRAAEKLfpqlvrasaqtrvfnpqdySMQPPN-QELIVRDLHDNMWTFRHIYRGQPKRHLLTTGWSLFVGAKR 233
                        89*********************999*******999999999998555544.49************************************** PP

                        --TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3  74 LkegDfvvFkldgrsefelvvkvfrk 99 
                        Lk+gD+v+F   ++++ +l+v+v+r+
  GRMZM2G086949_P01 234 LKAGDSVLFI--RDEKSQLLVGVRRA 257
                        **********..4577778*****97 PP
2Auxin_resp110.81.4e-36282364183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaas++  F+++YnPr+s+s Fv+++++++ka++ + svGmRf m+fete+ss+rr++G +vg+sd+dp+rWpnSkWr+L+
  GRMZM2G086949_P01 282 AAHAASSGGSFTIYYNPRTSPSPFVIPLARYNKATYLQPSVGMRFAMMFETEESSKRRCTGAIVGISDYDPMRWPNSKWRNLQ 364
                        79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.02E-41133285IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.7E-38136270IPR015300DNA-binding pseudobarrel domain
CDDcd100172.24E-19142256No hitNo description
SMARTSM010191.2E-21143258IPR003340B3 DNA binding domain
PfamPF023624.3E-20143257IPR003340B3 DNA binding domain
PROSITE profilePS5086311.73143258IPR003340B3 DNA binding domain
PfamPF065074.1E-32282364IPR010525Auxin response factor
PfamPF023097.1E-9853942IPR033389AUX/IAA domain
PROSITE profilePS5174522.809855939IPR000270PB1 domain
SuperFamilySSF542774.32E-8874934No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0004006anatomymesophyll cell
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0025589anatomyleaf lamina tip
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 958 aa     Download sequence    Send to blast
MASSQEKATS GVLRNAAALL DEMQLMGETQ GAKKVINSEL WHACAGPLVC LPQRGSLVYY  60
FPQGHSEQVA ATTKKIPNSR IPNYPSLPPQ LLCQVHNITL HADKETDEIY CQMTLQPLHS  120
ETDVFPIPTL GAYTKSKHPT EYFCKNLTAS DTSTHGGFSV PRRAAEKLFP QLVRASAQTR  180
VFNPQDYSMQ PPNQELIVRD LHDNMWTFRH IYRGQPKRHL LTTGWSLFVG AKRLKAGDSV  240
LFIRDEKSQL LVGVRRATRQ QPALSSSVLS TDSMHIGVLA AAAHAASSGG SFTIYYNPRT  300
SPSPFVIPLA RYNKATYLQP SVGMRFAMMF ETEESSKRRC TGAIVGISDY DPMRWPNSKW  360
RNLQVEWDEH GYGERPERVS IWDIETPENM VFSSPLNSKR QCLPSYGVPG LQIGSVNMSS  420
IPRAQGNPIG NLQHMPGMGS ELALLLLNQS GQNIGSPIAC QQSSFSSIIQ NAKHSYFPPK  480
TFGASTASMK QESMPSTEAQ PQLNALGIQR SDRVSCEVQT ASDSNPAQEM SVKPRAPRST  540
DSHSSQSISD QNSKGEPRTK TRRSKKSSYQ KTISDKSELC SVPSQICDDK KHGSEPRLAD  600
CEAEQATCGN NEESSGALTH GDFAGELQVQ QQVEQHELLA PPKIESSKSP DGGKSVSSFP  660
NQGCIPQFFE GLDWMIPPSY YQDSNGIQSV TASDNIFNPS EGIPSTMNAD ALDAFQTSCL  720
SECFPSSIQE FIGSPDINTL AFMSPEMQQL DAGSNLPSTS NSYVQMSFSE ESHSASLSGL  780
HMEAIHINSS SCSQPLATGS FDAGAFPKLS NIRECQPLPL QEIHTSSMGT PSCSMDAAAE  840
YGTDRSAKQM KPPVRTYTKV QKLGSVGRCI DVTRFRDYHE LRSAIACMFG LQGKLEHPGS  900
SDWKLVYVDY ENDVLLVGDD PWEEFINCVR CIRILSPSEV QQMSENGVHV LNDCIQIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A0.01738931392Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1002790.0endosperm| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G086949
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G086949_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0045440.0HM004544.1 Zea mays auxin response factor 29 (ARF29) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008663701.10.0auxin response factor 11 isoform X1
RefseqXP_008663702.10.0auxin response factor 11 isoform X1
SwissprotQ01K260.0ARFK_ORYSI; Auxin response factor 11
SwissprotQ8S9830.0ARFK_ORYSJ; Auxin response factor 11
TrEMBLA0A1D6JH510.0A0A1D6JH51_MAIZE; Auxin response factor
STRINGGRMZM2G086949_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86733241
Representative plantOGRP82601216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein
Publications ? help Back to Top
  1. Shen C, et al.
    Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.).
    J. Exp. Bot., 2010. 61(14): p. 3971-81
    [PMID:20693412]
  2. Indoliya Y, et al.
    Decoding regulatory landscape of somatic embryogenesis reveals differential regulatory networks between japonica and indica rice subspecies.
    Sci Rep, 2016. 6: p. 23050
    [PMID:26973288]