PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G086880_P01
Common NameLOC103636099, ZEAMMB73_763179
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HSF
Protein Properties Length: 348aa    MW: 37409.5 Da    PI: 7.9859
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G086880_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.71.6e-32351262102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        F+ k+y+++ d++++ l++w +++nsfvv+d+  f++ +Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+h+sF +g+++l
  GRMZM2G086880_P01  35 FVAKTYQMVCDPRTDALVRWGSENNSFVVVDPAGFSRLLLPCFFKHRNFSSFVRQLNTYGFRKVHPDR---------WEFAHESFLRGQTHL 117
                        9****************************************************************999.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l +i r+k+
  GRMZM2G086880_P01 118 LPRIVRRKK 126
                        ******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.1E-5031124IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.0E-3531124IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.53E-3332124IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.3E-2835124IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-163558IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-167385IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407498IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-168698IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MMDGLHTDLA LGLLGCGGVG VGSSGRGEQL QTAPFVAKTY QMVCDPRTDA LVRWGSENNS  60
FVVVDPAGFS RLLLPCFFKH RNFSSFVRQL NTYGFRKVHP DRWEFAHESF LRGQTHLLPR  120
IVRRKKRGEG ACTSSGGDAQ AQYAAAAAGC CISMGGEDHR TEGEAEAAVL EEVQRLRQEQ  180
TAIGEELAQM SRRLQATERR PDQLMSFLAR LAEDPDGVTR HLVEQAAEKK RRRMMQLASQ  240
PVRRLPPPPP PPPVLHHPLL ALGGAAAAAA KGLDGGCQWA EQKKPSVVLT AAFDHPAASY  300
CGAQHAVPNL GGGNGGGGIN GMGLTADETA VETTTTPFPF CLLGQGFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A3e-233512410110Heat shock factor protein 1
5hdn_A3e-233512410110Heat shock factor protein 1
5hdn_B3e-233512410110Heat shock factor protein 1
5hdn_C3e-233512410110Heat shock factor protein 1
5hdn_D3e-233512410110Heat shock factor protein 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G086880
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G086880_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0694791e-116AK069479.1 Oryza sativa Japonica Group cDNA clone:J023019J23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008656687.10.0heat stress transcription factor C-1a
SwissprotQ6VBA41e-122HFC1A_ORYSJ; Heat stress transcription factor C-1a
TrEMBLA0A1D6FZU31e-178A0A1D6FZU3_MAIZE; Heat stress transcription factor C-1
TrEMBLA0A3L6DPA61e-178A0A3L6DPA6_MAIZE; Heat stress transcription factor C-1a
STRINGGRMZM2G086880_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Representative plantOGRP1290245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.18e-59heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]