PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G086573_P01 | ||||||||
Common Name | umc1542 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | AP2 | ||||||||
Protein Properties | Length: 492aa MW: 52568.1 Da PI: 6.5107 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.1 | 5.8e-15 | 126 | 185 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g GRMZM2G086573_P01 126 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 185 57*******************666664477446*************************98 PP | |||||||
2 | AP2 | 48.1 | 2.9e-15 | 228 | 279 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g GRMZM2G086573_P01 228 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 279 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.38E-17 | 126 | 194 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.1E-12 | 126 | 185 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.03E-21 | 126 | 195 | No hit | No description |
PROSITE profile | PS51032 | 19.256 | 127 | 193 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.8E-16 | 127 | 194 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-29 | 127 | 199 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-6 | 128 | 139 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.23E-18 | 228 | 289 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.2E-10 | 228 | 279 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.64E-24 | 228 | 289 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.5E-18 | 229 | 287 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.348 | 229 | 287 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-33 | 229 | 293 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-6 | 269 | 289 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 492 aa Download sequence Send to blast |
MDTSHHYHPW LNFSLAHHCD LEEEERGAAA ELAAIAGAAP PPKLEDFLGG GVATGGPEAV 60 APAEMYDSDL KFIAAAGFLG GSAAAAATSP LSSLDQAGSK LALPAAAAAP APEQRKAVDS 120 FGQRTSIYRG VTRHRWTGRY EAHLWDNSCR REGQSRKGRQ VYLGGYDKEE KAARAYDLAA 180 LKYWGSSTTT NFPVAEYEKE VEEMKNMTRQ EFVASLRRKS SGFSRGASIY RGVTRHHQHG 240 RWQARIGRVA GNKDLYLGTF STEEEAAEAY DIAAIKFRGL NAVTNFEISR YNVETIMSSN 300 LPVASMSSSA AAAAGGRSSK ALESPPSGSL DGGGGMPVVE ASTAPPLFIP VKYDQQQQEY 360 LSMLALQQHH QQQQAGNLLQ GPLVGFGGLY SSGVNLDFAN SHGTAAPSSM AHHCYANGTA 420 SASHEHQHQM QQGGENETQP QPQQSSSSCS SLPFATPVAF NGSYESSITA AGPFGYSYPN 480 VAAFQTPIYG ME |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.2945 | 0.0 | embryo| meristem| pollen |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G086573 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Present in inflorescence meristem and later in young floral mersitems. Expressed in sepal, petal, stamen and carpel primordia. In petal, progressively confined to petal margin and epidermal cells. Restricted to sporogenous tissue in the stamen and to the medial ridge of the carpel. Present in tissues that develop from this ridge, such as placenta and ovule primordia. In ovules, first expressed in distal part of the funiculus and the outer integument, before being confined to the funiculus. {ECO:0000269|PubMed:15988559}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G086573_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT069215 | 0.0 | BT069215.1 Zea mays full-length cDNA clone ZM_BFb0341N12 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001344573.1 | 0.0 | uncharacterized protein LOC100384122 | ||||
Swissprot | Q6PQQ3 | 1e-133 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A1D6DVR0 | 0.0 | A0A1D6DVR0_MAIZE; AP2-like ethylene-responsive transcription factor AIL5 | ||||
STRING | GRMZM2G086573_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP797 | 38 | 151 | Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-120 | AINTEGUMENTA-like 5 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G086573_P01 |
Publications ? help Back to Top | |||
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