PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G086474_P01
Common NameLOC100381462, ZEAMMB73_811637
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 292aa    MW: 31344.2 Da    PI: 9.4351
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G086474_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.9e-1380131155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +r++h ++Er+RR+++N+ ++ Lr+l+P +   +  + + a+++  A++++k+L+
  GRMZM2G086474_P01  80 QRMTHIAVERNRRRQMNEYLAALRSLMPDS---YVHRSDQASVVSGAIDFVKELE 131
                        79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.33E-1278135No hitNo description
SuperFamilySSF474599.68E-1878154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.3279130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-1080131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1480151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-1185136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MTLEALCPTS SDVLVYDTFN AAAACAAASA GTFLFGNAPP VEVPAAAAAQ ANGENSVQQG  60
RRKRRRRQRS TKNAEDAESQ RMTHIAVERN RRRQMNEYLA ALRSLMPDSY VHRSDQASVV  120
SGAIDFVKEL EQQLQSLEAQ KLALKRQLQQ QQQRSVTAAI RDDAAQPARG RDDIGAGAGG  180
DAAARSEVSA PEPDPPPFAR FFRYPQYARR HAAAREDAGA EETSRASAVA DVEVGVVVDA  240
HASLRVMAPR RPGQLLRMVA GMQALGLAVL HLNVATAAVD ATALYTLSLK AT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15967GRRKRRRRQ
26066RRKRRRR
36165RKRRR
46168RKRRRRQR
58091RMTHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.809990.0ear| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G086474
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G086474_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278450.0KJ727845.1 Zea mays clone pUT5889 bHLH transcription factor (bHLH134) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023156916.10.0uncharacterized protein LOC100381462 isoform X1
TrEMBLK7U5T80.0K7U5T8_MAIZE; Putative HLH DNA-binding domain superfamily protein
STRINGGRMZM2G086474_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-33bHLH family protein