PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G086277_P01
Common NameLOC100284277
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 404aa    MW: 45066.6 Da    PI: 7.2358
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G086277_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.18.5e-07152175123
                        EEETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                        y+C+ Cg++F+++ +L+rH r  H
  GRMZM2G086277_P01 152 YSCSVCGRRFPTRPDLTRHFRQlH 175
                        99*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.9E-6150178No hitNo description
Gene3DG3DSA:3.30.160.605.4E-5151178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.5E-5152175IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.464152180IPR007087Zinc finger, C2H2
PROSITE patternPS000280154175IPR007087Zinc finger, C2H2
CDDcd061678.55E-9218302No hitNo description
Gene3DG3DSA:3.40.50.10104.0E-5227291IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0020126anatomytassel inflorescence
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MPHVLSFLHL HLPLNTAPLH SFRVHRTRHS HPHLSLRTRR ASATAAAAEA ENPSASADVE  60
MVRGRDGVWT ARSPTVVVLW DLDNKPPRGP PFPAATALIG AASLLGRVVS ISAFANRHAF  120
SHLPGWVTAE RRARRALDRS ERAGVVVPSV PYSCSVCGRR FPTRPDLTRH FRQLHERERN  180
KKLSRLRSLK GKKRQKFRER FITGNTKYED AARELLTPKV GYGLASELRR AGVHVRTVPD  240
KPQAADHALK RQVKHSVACG VDWLVLVSDD SDFTDTVRNA RAADLRTVVV GDGCRALGKV  300
ADIWLPWDRV ENGEVDEEML RSCTFSEYRE DQGTERDGQF IGDWDAGDFD DVVDDIVGTR  360
TSLLGATTMS AFADEDIADG IFGVELTGDN MFWSCDDEEE DDYL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1230100.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G086277
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G086277_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9677610.0EU967761.1 Zea mays clone 305881 zinc finger, C2H2 type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150644.10.0zinc finger, C2H2 type family protein
TrEMBLB6TRZ60.0B6TRZ6_MAIZE; Zinc finger, C2H2 type family protein
STRINGGRMZM2G086277_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98063234
Representative plantOGRP30481420
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.12e-82C2H2-like zinc finger protein