PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G085873_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | YABBY | ||||||||
Protein Properties | Length: 160aa MW: 18350.8 Da PI: 9.8128 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 173.4 | 1.4e-53 | 1 | 134 | 31 | 170 |
YABBY 31 lfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekee....sastsvssekl.senedeevprvppvir 117 ++++vtvrCGhCtsllsvnl+ q l+++++ + +e + kv++ ++++n+ ++ s++ +++ +l + + +++ + +r GRMZM2G085873_P01 1 MLNMVTVRCGHCTSLLSVNLRGLIQSLPVVQN--HYSQE----HFKVQNFSFTENYPEYAappsSSRYRMPT-MLsAKGDLDHMLH----VR 81 5799*************************997..44444....44455555555544443000033333333.4413334444444....89 PP YABBY 118 PPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 PekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWahfP+ihfgl GRMZM2G085873_P01 82 APEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGL 134 ***************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.8E-53 | 1 | 134 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.49E-8 | 79 | 128 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.3E-5 | 80 | 128 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MLNMVTVRCG HCTSLLSVNL RGLIQSLPVV QNHYSQEHFK VQNFSFTENY PEYAAPPSSS 60 RYRMPTMLSA KGDLDHMLHV RAPEKRQRVP SAYNRFIKEE IRRIKANNPD ISHREAFSTA 120 AKNWAHFPNI HFGLGPYESS NKLDETIGAT GHPRKIQDPY |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.8827 | 1e-105 | ear| meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G085873 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:17216490}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G085873_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT042010 | 1e-102 | BT042010.1 Zea mays full-length cDNA clone ZM_BFb0106K19 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008666788.2 | 1e-116 | protein YABBY 2 | ||||
Swissprot | Q10FZ7 | 9e-77 | YAB2_ORYSJ; Protein YABBY 2 | ||||
TrEMBL | A0A3G1G531 | 1e-117 | A0A3G1G531_MAIZE; YAB2.1 | ||||
TrEMBL | A0A3G1G562 | 1e-117 | A0A3G1G562_ZEAMP; YAB2.1 | ||||
STRING | GRMZM2G085873_P01 | 1e-119 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1394 | 37 | 121 | Representative plant | OGRP2210 | 12 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 8e-48 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G085873_P01 |