PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G085467_P02 | ||||||||
Common Name | LOC100284866, Zm.31290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 408aa MW: 42596.8 Da PI: 8.7786 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40 | 7e-13 | 337 | 382 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L+el+P+ k + a++L +Av+YIk+Lq GRMZM2G085467_P02 337 SIAERVRRTKISERIRKLQELVPNM----EKQTNTADMLDLAVDYIKDLQ 382 689*********************7....467*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.212 | 331 | 381 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.45E-16 | 334 | 394 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.95E-13 | 335 | 386 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.5E-15 | 336 | 393 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.1E-13 | 337 | 387 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.4E-10 | 337 | 382 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MYGAPLPKDL NLPAALPQPT RTPPQQQMGS PGLLRYRSAP STLLGEVMCG GDQDFPAAGG 60 AGHGPPDHAA ADNVLARFLA GHHSETRDCK PPRPAAAAHF MDEAAVASMA ASQQQQLMYQ 120 SQQEQQMAAM EGLYRNVSSG GTEHGAAVGA GNNSLIRQSS SPAGFLNHLN MDNGYGSMLR 180 VGMGGGGFRN GVSDARLKGQ LSFSSRQGSV MSQISEVGSE ELDGGGGSGS PEAAGSNASG 240 AARGYSGIPG YPMGGLASGA WPDEASPSPT SGAKRPRDSG PALQQPLAPQ LSLPSGKNKG 300 GRAASAEMAA IEKFLQFQDA VPCKIRAKRG CATHPRSIAE RVRRTKISER IRKLQELVPN 360 MEKQTNTADM LDLAVDYIKD LQKQVKVLND GRASCTCSAG ELQGQFTR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G085467 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G085467_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU969962 | 0.0 | EU969962.1 Zea mays clone 337883 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001151233.1 | 0.0 | uncharacterized protein LOC100284866 | ||||
TrEMBL | A0A3L6E1S0 | 0.0 | A0A3L6E1S0_MAIZE; Transcription factor bHLH130 | ||||
TrEMBL | B6TY97 | 0.0 | B6TY97_MAIZE; Helix-loop-helix DNA-binding domain containing protein | ||||
STRING | GRMZM2G085467_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1884 | 38 | 103 | Representative plant | OGRP511 | 15 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 2e-50 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G085467_P02 |
Entrez Gene | 100284866 |
Publications ? help Back to Top | |||
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