PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G084684_P01
Common NameLOC103627203, Zm.126377
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Trihelix
Protein Properties Length: 366aa    MW: 38952.1 Da    PI: 4.7185
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G084684_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix79.74.4e-2536144185
           trihelix   1 rWtkqevlaLiearremeerlrrgk...........................lkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 
                        rWt+qe+l+Lie++r +e r +r+                            + +p+W++v++++r++g+er+p+qC+++w+nl+++ykkik
  GRMZM2G084684_P01  36 RWTRQEILVLIEGKRMVEGRGGRAGrgrlaaaaaaaaaaasgeasataaaaaALEPKWAAVAEYCRRHGVERGPVQCRKRWSNLAGDYKKIK 127
                        8**************999999986556678888889999999999999998888************************************** PP

           trihelix  66 egekkr.tsessstcpyfdql 85 
                        e+e+   +++     p f  +
  GRMZM2G084684_P01 128 EWERAApAER----DPSFWAM 144
                        ****972233....3555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.0E-53648IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.0E-586119IPR009057Homeodomain-like
PfamPF138377.3E-1090144No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MSTAGDPAGA AAAAAAAAAA AAAAPAPSGR APRLPRWTRQ EILVLIEGKR MVEGRGGRAG  60
RGRLAAAAAA AAAAASGEAS ATAAAAAALE PKWAAVAEYC RRHGVERGPV QCRKRWSNLA  120
GDYKKIKEWE RAAPAERDPS FWAMRNDARR ERRLPGFFDR EVYDILEGRA RPVLDDRAAR  180
NAAAAEEAVA VAVAVHVEEE DREAEVPEAV FDSGRPATEE ALFSEDEEEE EVEDAPAVAP  240
PPPAPSVVAV PVSEKPEASR HQQSAEQGTS KDTQPEQSSE RDAPAEQGGQ KRPRTDEAAG  300
EGEGTAYLQS KLIEILDRNS RLVAAQLEAQ NQNCELDREQ RNDQANSLVL VLGRLADALG  360
RIADKL
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G084684
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G084684_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008645723.10.0trihelix transcription factor ASR3
TrEMBLA0A1D6H9610.0A0A1D6H961_MAIZE; Trihelix transcription factor ASR3
STRINGGRMZM2G084684_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39152648
Representative plantOGRP17471336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.15e-46Trihelix family protein