PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G084583_P02 | ||||||||
Common Name | Zm.155123 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB_related | ||||||||
Protein Properties | Length: 114aa MW: 12893.9 Da PI: 9.1625 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.2 | 1.9e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEde+lv +++ +G g+W++ ++ g+ R++k+c++rw +yl GRMZM2G084583_P02 14 RGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 89******************************99************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.8E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.17 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.1E-23 | 15 | 90 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.42E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS50090 | 4.635 | 62 | 105 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 9.0E-10 | 65 | 96 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 61 | 66 | 111 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence Send to blast |
MGRSPCCEKA HTNRGAWTKE EDERLVAYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TADEDDLIVK LHSLLGNKYV RDASAAALLR TVVHCTRTCL PLEV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-16 | 13 | 99 | 26 | 108 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.9667 | 1e-120 | meristem| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G084583 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that regulates negatively genes involved in anthocyanin biosynthesis. {ECO:0000269|PubMed:7920701}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G084583_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF474119 | 0.0 | AF474119.1 Zea mays typical P-type R2R3 Myb protein (Myb26) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008664600.1 | 6e-59 | myb-related protein Zm38 | ||||
Swissprot | P20025 | 7e-60 | MYB38_MAIZE; Myb-related protein Zm38 | ||||
TrEMBL | A0A1D6KN59 | 1e-57 | A0A1D6KN59_MAIZE; Myb transcription factor38 | ||||
TrEMBL | Q8S3Z8 | 2e-58 | Q8S3Z8_MAIZE; Typical P-type R2R3 Myb protein (Fragment) | ||||
STRING | GRMZM2G084583_P01 | 2e-58 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 1e-59 | myb domain protein 4 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G084583_P02 |
Publications ? help Back to Top | |||
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