PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G084130_P01

Common Name

DOF24, LOC103625855

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

Dof

Protein Properties

Length: 379aa MW: 39031.4 Da PI: 8.6995

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G084130_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.1	8e-38	64	121	3	60
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++ l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+r+ + GRMZM2G084130_P01 64 QTPLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRRPRP 121 66789*************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.8E-31	66	119	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	4.0E-26	67	118	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.115	67	121	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	69	105	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MIQELLVGAA MDQLKRVNDV NPASLPLLLH PVVSNPSPTS SRSSAQQRST AAATSSPQGQ 60 RAEQTPLRCP RCDSSNTKFC YYNNYNLTQP RHFCKTCRRY WTKGGALRNV PIGGGCRRPR 120 PMPTPVATKP AVSCKAVGGA PSLGLGVGLG MGMGTGAGLD GPWASSQQAA AAQAQLMALL 180 NSARGVQGGG SMHRVLGLDA IAHLPLHVLP DAGGSNASGT VPSLWPPRMD SQLGMGPLGQ 240 HDVLSSLGRL KLPPPSSAAA ASCYSDQLHA VVSSAAGRGH EYEAAAPGVT PLPCTTALAS 300 LPPAASSVSA ALASATVGLD LPPVSLPASE MQYWAGPAAM SVAWPDLPTP NGVLPRETNP 360 NLMWSCTDDA AVYPRDNTS

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MIQELLVGAA MDQLKRVNDV NPASLPLLLH PVVSNPSPTS SRSSAQQRST AAATSSPQGQ  60
RAEQTPLRCP RCDSSNTKFC YYNNYNLTQP RHFCKTCRRY WTKGGALRNV PIGGGCRRPR  120
PMPTPVATKP AVSCKAVGGA PSLGLGVGLG MGMGTGAGLD GPWASSQQAA AAQAQLMALL  180
NSARGVQGGG SMHRVLGLDA IAHLPLHVLP DAGGSNASGT VPSLWPPRMD SQLGMGPLGQ  240
HDVLSSLGRL KLPPPSSAAA ASCYSDQLHA VVSSAAGRGH EYEAAAPGVT PLPCTTALAS  300
LPPAASSVSA ALASATVGLD LPPVSLPASE MQYWAGPAAM SVAWPDLPTP NGVLPRETNP  360
NLMWSCTDDA AVYPRDNTS

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G084130

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G084130_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ726997	0.0	KJ726997.1 Zea mays clone pUT3969 C2C2-DOF transcription factor (DOF24) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008644472.1	0.0	dof zinc finger protein 4
TrEMBL	A0A060D4J5	0.0	A0A060D4J5_MAIZE; C2C2-DOF transcription factor (Fragment)
STRING	GRMZM2G084130_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7710	31	44
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.1	9e-33	Dof family protein

Link Out ? help Back to Top
Phytozome	GRMZM2G084130_P01
Entrez Gene	103625855