PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G084014_P01
Common NameZm.39625
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 439aa    MW: 47367.2 Da    PI: 6.3089
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G084014_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84e-05265284120
                        EEETTTTEEESSHHHHHHHH CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                        ++Cp C k+F+r  n++ H+
  GRMZM2G084014_P01 265 FSCPVCFKTFNRYNNMQMHM 284
                        89*****************9 PP
2zf-C2H210.90.0014351371323
                        ETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                        C  Cgk F  k + ++H +++
  GRMZM2G084014_P01 351 CRRCGKAFAVKGDWRTHEKNC 371
                        *****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.6E-6265284IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.64265292IPR007087Zinc finger, C2H2
PROSITE patternPS000280267287IPR007087Zinc finger, C2H2
SuperFamilySSF576673.64E-6331369No hitNo description
Gene3DG3DSA:3.30.160.604.2E-5336369IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.538349369IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MENPYTSFFN SHPQHHRYYY HPAPPPPAPA PAAYHPSLPF FAAHRQPPAP TAPAPPSPPL  60
REALPLLSLA PTRHEERERR ARPPAPALED SEENGRDEGE EEQEEEEGPT ASSKSNHGQH  120
QRLGVGRQRG FFADLNASAA GDDDDPMDVE PEAAADGSGS GSAAAGDDVT VALRIGLPLP  180
GPAELVSDLS SSGGARRQQH QHDGGGGEEE EEDEEGDGEN GGGGEEEGTT AAAPLGFPSS  240
PIGRLNKGQY WIPTPSQILI GPTQFSCPVC FKTFNRYNNM QMHMWGHGSQ YRKGPESLRG  300
IQPTAMLRLP CYCCSPGCRN NIDHPRAKPL KDFRTLQTHY KRKHGLKPFL CRRCGKAFAV  360
KGDWRTHEKN CGRLWYCLCG SEFKHKRSLK DHARAFGRGH GFVGGGPPGA GCGGGLDDDD  420
DGAVSDVEHD GAATAARSM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.396250.0tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G084014
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G084014_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9696610.0EU969661.1 Zea mays clone 333696 zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001144611.20.0uncharacterized protein LOC100277627
SwissprotQ9SVY11e-120ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A1D6I6W90.0A0A1D6I6W9_MAIZE; Zinc finger protein
TrEMBLA0A3L6E4P90.0A0A3L6E4P9_MAIZE; Zinc finger protein WIP2
STRINGGRMZM2G084014_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-111C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]