PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G083964_P01
Common NameLOC103644329, Zm.26697
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NF-YC
Protein Properties Length: 367aa    MW: 39341.3 Da    PI: 11.2932
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G083964_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC31.53.9e-10262351998
              NF-YC   9 qiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
                        q   a+++   ++ +ar++++++a++   + s+ea  l+ ka e+f+ +++  ++ +a + +++++   ++++av++ ++ +fl d vp+
  GRMZM2G083964_P01 262 QKAAAANMGVCSFSMARVRQLMRAEDPTIRPSSEAVFLINKASEFFLGKFAEDAYHNAAKDRKKSIIYDNLSTAVSSQKTLKFLSDFVPQ 351
                        5566677778899***********9999999*********************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.5E-14273351IPR009072Histone-fold
PfamPF008085.4E-9274336IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.6E-17275351IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MAGKKTTPAK PAPSSTQRNG SAVPGSKSRP KQASEEAAAA SAKAQSPSKP RKITKEKPAA  60
AKKKREKTEP QEGGKRRKQQ VLADAATPSK KRKKGGEGPE PKEATPAKKH KPAGTPPKKQ  120
KAPSKPATPA KKQQSPGKAE KLTPKKKQQS PGKAEKPTPK KKQQSPGKAE KPTPKKKQQS  180
PGKAEKAAPK KQQQQPAGKA RKPAAAATSP TKKKQAKREK PTPTKRKRGD DEQAKEAKSP  240
KRAPADGAAR ASTPVKKKLK DQKAAAANMG VCSFSMARVR QLMRAEDPTI RPSSEAVFLI  300
NKASEFFLGK FAEDAYHNAA KDRKKSIIYD NLSTAVSSQK TLKFLSDFVP QRVAAEDALK  360
AMTSNNS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18993KKRKK
2211227KKKQAKREKPTPTKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.266970.0ear| meristem| pericarp| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G083964
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G083964_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9487900.0EU948790.1 Zea mays clone 385255 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008665760.10.0neurofilament heavy polypeptide
RefseqXP_008665761.10.0neurofilament heavy polypeptide
TrEMBLA0A096R9U60.0A0A096R9U6_MAIZE; Nuclear factor Y subunit C10
STRINGGRMZM2G083964_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128261922
Representative plantOGRP86701112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.17e-21nuclear factor Y, subunit C10