PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G083964_P01 | ||||||||
Common Name | LOC103644329, Zm.26697 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NF-YC | ||||||||
Protein Properties | Length: 367aa MW: 39341.3 Da PI: 11.2932 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 31.5 | 3.9e-10 | 262 | 351 | 9 | 98 |
NF-YC 9 qiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 q a+++ ++ +ar++++++a++ + s+ea l+ ka e+f+ +++ ++ +a + +++++ ++++av++ ++ +fl d vp+ GRMZM2G083964_P01 262 QKAAAANMGVCSFSMARVRQLMRAEDPTIRPSSEAVFLINKASEFFLGKFAEDAYHNAAKDRKKSIIYDNLSTAVSSQKTLKFLSDFVPQ 351 5566677778899***********9999999*********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.5E-14 | 273 | 351 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.4E-9 | 274 | 336 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 2.6E-17 | 275 | 351 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MAGKKTTPAK PAPSSTQRNG SAVPGSKSRP KQASEEAAAA SAKAQSPSKP RKITKEKPAA 60 AKKKREKTEP QEGGKRRKQQ VLADAATPSK KRKKGGEGPE PKEATPAKKH KPAGTPPKKQ 120 KAPSKPATPA KKQQSPGKAE KLTPKKKQQS PGKAEKPTPK KKQQSPGKAE KPTPKKKQQS 180 PGKAEKAAPK KQQQQPAGKA RKPAAAATSP TKKKQAKREK PTPTKRKRGD DEQAKEAKSP 240 KRAPADGAAR ASTPVKKKLK DQKAAAANMG VCSFSMARVR QLMRAEDPTI RPSSEAVFLI 300 NKASEFFLGK FAEDAYHNAA KDRKKSIIYD NLSTAVSSQK TLKFLSDFVP QRVAAEDALK 360 AMTSNNS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 89 | 93 | KKRKK |
2 | 211 | 227 | KKKQAKREKPTPTKRKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.26697 | 0.0 | ear| meristem| pericarp| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G083964 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G083964_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU948790 | 0.0 | EU948790.1 Zea mays clone 385255 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008665760.1 | 0.0 | neurofilament heavy polypeptide | ||||
Refseq | XP_008665761.1 | 0.0 | neurofilament heavy polypeptide | ||||
TrEMBL | A0A096R9U6 | 0.0 | A0A096R9U6_MAIZE; Nuclear factor Y subunit C10 | ||||
STRING | GRMZM2G083964_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12826 | 19 | 22 | Representative plant | OGRP8670 | 11 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 7e-21 | nuclear factor Y, subunit C10 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G083964_P01 |
Entrez Gene | 103644329 |