PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G083374_P01

Common Name

Zm.68028

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

FAR1

Protein Properties

Length: 2981aa MW: 324050 Da PI: 7.3832

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G083374_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.2	9.7e-17	2784	2871	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkle.....le 84 +fY++YA+evGF ++k +++k+ +++++Cs+egk++e+ + + r++ ++rt+Cka +k+kk + d+k +v++++ e GRMZM2G083374_P01 2784 NFYSQYAYEVGFPLKKYRERKN-------CKWLNCSMEGKNAERVAG-NPRIRNTCSKRTQCKAGMKLKKIYdDAKENVISVRidlvnYE 2865 6**************99998.......99*********999.9999****************999999998887666669 PP FAR1 85 HnHela 90 HnHe+ GRMZM2G083374_P01 2866 HNHEFL 2871 ***985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04357	4.4E-16	2329	2581	IPR007452	Translocation and assembly module TamB
Pfam	PF03101	4.3E-7	2784	2871	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane
GO:0048046	Cellular Component	apoplast

Sequence ? help Back to Top
Protein Sequence Length: 2981 aa Download sequence Send to blast
MSHCPRASLS LAPPSPFLFP HCPSPRRRRR PRGRSLHLTS RPLLTLARFD PPRLFRLKVS 60 DSSASPGEAA HAHAHHSNHR AHAHHSPAPS LLPWPRALIG SLAPVWREGL FLVRCSVFAA 120 VVSVAGALSW FAQLRARSFV EARLLPAACS ALSEYLQREV RLGKVRSISP IGITLQTCSI 180 GPHEEEFSCA EVPVMKIRVR PFASLRRGRV VVDAVLSEPS ALVAQKKDFS WLGIPAPSEG 240 TVKRHSGEEG IDYRTKTRRL AREKAAEQWN EERDKAAREA AEKGYTIPSG QSVPLSSNEI 300 LEADGPTEIG KSSPPLCADQ MHKNDHHLAT GIDSGSKHAD LEKSFGFKSP IPGINLWSRV 360 ISSPSRLRYM RKAPSKVIPD VDNSSQQRIL RRSADAAVSY FQNTGHINID DSSPGPGKGS 420 SDGGHANVGG SGINSNDETV SNSKTASTSL AESPSHSQLS SQCSSSNLDN LLLWHNLEDL 480 QIGQAKNPSG NKPVPHQENI FGNFGSCTHA HNWVPFWPFQ LKSCPVSFNS PWASLDLQIE 540 KLKSQFAIGP GDFSAELTEG VSEIHPGGVQ NALPITLDSV YFNGGNLMLL GYGDQEPREM 600 KHASGHVKFK NNYNRVHVHV TGNCMEWRQD RSSQGGGYLS TDVFVDIAEE TWHANLNIVD 660 AFAPLFERIL EIPVVWHKGR ATGEVHICMS KGDSFPSIHG QLDVKGLAFQ ILDAPSSFSD 720 IVAKLSFRGQ RVFLHNASGW FGDAPVEASG DLGLNPEDGE FHLMCQVPSV EVNALMRTMK 780 MKPLMFPLAG SVTAVFNCQG PLDAPVFVGS GIVSRKSFSV SGMPPSAASE AVMQNKEAGA 840 VAAFDHIPFS HVSANFTFNL DNSVADLYGI RACLLDGGEI RGAGNAWICP EGEGDDSAMD 900 INLSGTILLD KVLHRYIPGG IQLIPLKIGE LNGETRLSGS LIRPKFDIKW AAPNAEDSFS 960 DARGNIVIAH DYIMVNSSSV SFDLNSRVQT SYINDYLLNK ETYQMKKIMP LIVEGVDLDL 1020 RMRGFEFAHI ASSIPFDSPR PLHLKASGRV KFQGKIMKSS NIADGNINGV LQSNIDQNKL 1080 ETNASKLVGD ISLSGIKLNQ LMLAPQSTGF LSISRDSMMV RNLTLDELEF ASLRGFVQKV 1140 PLRKSVSVWD RLGPLPVVAG PRSVLGAGAT AQVFAAEVAA GFGLLEDSFS VHRSSPEDFV 1200 LILNSEQAAI EVYNNGSVFN SPSGSFKFIR WSGLAHAEVV SFPSLVMVEF GGIPVHAWEL 1260 ATAQNLLRDI CSDVELHPDT VNRFDFSSFK VFGWCYRPQL IPASFELLIL ERVFGSGGPP 1320 AVRRLLSYPV TASVSRVPLA EAAVPLSFPP TPTSDGGDRE TGSRRPRLGR GAPVRLDGSS 1380 SAVSSAASQS GRRHVHGRLG LAPMHGRHVA SGRWPLHGGV QGGDGSFPVT ARAGPEERGR 1440 DPIDGGALFG GVILAPEVDA VVGRAEGPGS NGGSSQGPSV GFPSSSGGPG RSLESVGPVR 1500 PLEIVGPEIE LHLGGSGVDS GDLRSTFVGG GVAPSPAAGA TPVAAKAGMV PAADAGMIPP 1560 SPTAGAPPVT KDAGMVPAAD AGLVPPLPAA DAADMAPAAV GPPSSFPAAA SGGLPVAGSG 1620 EPSSSSTAPP VLTGGMKSLR MMLGPGTRIW PRSPITYSRK GRRVVASPVL SPVPAQPGFV 1680 ERMSKAVDSI LDDPPMRQRR PRIHAGGTLP RRSRRLAGAG VEPPSIPQRI PLGKLRIVKE 1740 LGLLQTDHAE LLSPGVLDDY AKAELQLNFQ KRRGHGLLSI IRPKFSGVLG EALDIAARWS 1800 GDVGWGNTDS GKMISTLLRR LLFSYVVAQQ SNEAQLKRRP RRAQYCSITM EKSILEQANS 1860 KYEVQGEYVF PGTRDRFPVE SQSNGFIEKA MGGHLGSIMS SMGRWRMRLE VPGAEVAEML 1920 PLARLLSRST DPVIRSRSKE LFMQCLHSVG FNAESLNDQL KALEIYHDWL DDDTMEDIAF 1980 PGLAELRGYW RGSLDASGGG NGDTMADFDF NGEDWEWGTY KTQRVLASGS FSNNDGLRLD 2040 KLFIQKDNAT LHADGSILGP LTNLHFAVLN FPVGLIPALV QAIESSTTDS IHFLRQWLTP 2100 IKGILHMEGD LRGTLAKPEC DVQIRLLDGT IGGIDLGRAE VLASVTPTSR FVFDANFEPT 2160 IQSGHVNIQG SIPVTYVDNS SIEESPEEAD GKQGIIRIPV WARDRGSSNE ISEARMVRDK 2220 TEEGWEFQLA EKLKGLSYNM LEPGEVRIDA DIKDGGMMLI TALSPYANWL QGYADVFLQV 2280 KGTVDQPVVD GSATFNRAIV NSPFLRTPLT NFAGTIQVIS NRLCISSMES RVGRKGRLSM 2340 KGSLPLKNSE PSANDKIDLK CEVLDIRAKN ILSGQVDSQL QVTGSILRPD LSGMIRLSHG 2400 EAYLPHDKGN GAAVTRLTSN KSSYLLSGFD QSTTSQDVSR ILGSLSTSAE RDQSDTEKTL 2460 EHGSFNPNID ARLNDLKLTL GPELRIVYPL ILNFAVSGDL ELNGMVHPKY LRPKGILTFE 2520 NGEVNLVATQ VRLKNDHLNA AKFEPDLGLD PVLDLVLVGS EWQFKIQSRA SMWQDNLVVT 2580 STRSVDQDVL SPSEAAKVFE SQLAESLLEG DGQLAFKKLA TATLETLMPR IEGKGEFGQA 2640 RWRLVYAPQI PSLLSVDPTV DPLKSLANNI SFATEVEVQL GKRLQASVVR QMKDSEMAMQ 2700 WTLIYQLTKG VSVTPPAALR APGHIEEHTK TADVVGAEKH IPMRHIGPHE QDTPHILQSH 2760 PDNIDIRLIP KVGMTFSNVD EAYNFYSQYA YEVGFPLKKY RERKNCKWLN CSMEGKNAER 2820 VAGNPRIRNT CSKRTQCKAG MKLKKIYDDA KENVISVRID LVNYEHNHEF LKKDTEKGQL 2880 QCNKTHDREY MEFLSAMQES RIPPHCIMDF VTEMHGGPEN VPITVQDMSN LKKAWQRERN 2940 ANDVSKLLSF FSLCKKDNPQ FFFRLSTGQR RENFKHILVP C

Sequence ? help Back to Top

Protein Sequence Length: 2981 aa Download sequence Send to blast

MSHCPRASLS LAPPSPFLFP HCPSPRRRRR PRGRSLHLTS RPLLTLARFD PPRLFRLKVS  60
DSSASPGEAA HAHAHHSNHR AHAHHSPAPS LLPWPRALIG SLAPVWREGL FLVRCSVFAA  120
VVSVAGALSW FAQLRARSFV EARLLPAACS ALSEYLQREV RLGKVRSISP IGITLQTCSI  180
GPHEEEFSCA EVPVMKIRVR PFASLRRGRV VVDAVLSEPS ALVAQKKDFS WLGIPAPSEG  240
TVKRHSGEEG IDYRTKTRRL AREKAAEQWN EERDKAAREA AEKGYTIPSG QSVPLSSNEI  300
LEADGPTEIG KSSPPLCADQ MHKNDHHLAT GIDSGSKHAD LEKSFGFKSP IPGINLWSRV  360
ISSPSRLRYM RKAPSKVIPD VDNSSQQRIL RRSADAAVSY FQNTGHINID DSSPGPGKGS  420
SDGGHANVGG SGINSNDETV SNSKTASTSL AESPSHSQLS SQCSSSNLDN LLLWHNLEDL  480
QIGQAKNPSG NKPVPHQENI FGNFGSCTHA HNWVPFWPFQ LKSCPVSFNS PWASLDLQIE  540
KLKSQFAIGP GDFSAELTEG VSEIHPGGVQ NALPITLDSV YFNGGNLMLL GYGDQEPREM  600
KHASGHVKFK NNYNRVHVHV TGNCMEWRQD RSSQGGGYLS TDVFVDIAEE TWHANLNIVD  660
AFAPLFERIL EIPVVWHKGR ATGEVHICMS KGDSFPSIHG QLDVKGLAFQ ILDAPSSFSD  720
IVAKLSFRGQ RVFLHNASGW FGDAPVEASG DLGLNPEDGE FHLMCQVPSV EVNALMRTMK  780
MKPLMFPLAG SVTAVFNCQG PLDAPVFVGS GIVSRKSFSV SGMPPSAASE AVMQNKEAGA  840
VAAFDHIPFS HVSANFTFNL DNSVADLYGI RACLLDGGEI RGAGNAWICP EGEGDDSAMD  900
INLSGTILLD KVLHRYIPGG IQLIPLKIGE LNGETRLSGS LIRPKFDIKW AAPNAEDSFS  960
DARGNIVIAH DYIMVNSSSV SFDLNSRVQT SYINDYLLNK ETYQMKKIMP LIVEGVDLDL  1020
RMRGFEFAHI ASSIPFDSPR PLHLKASGRV KFQGKIMKSS NIADGNINGV LQSNIDQNKL  1080
ETNASKLVGD ISLSGIKLNQ LMLAPQSTGF LSISRDSMMV RNLTLDELEF ASLRGFVQKV  1140
PLRKSVSVWD RLGPLPVVAG PRSVLGAGAT AQVFAAEVAA GFGLLEDSFS VHRSSPEDFV  1200
LILNSEQAAI EVYNNGSVFN SPSGSFKFIR WSGLAHAEVV SFPSLVMVEF GGIPVHAWEL  1260
ATAQNLLRDI CSDVELHPDT VNRFDFSSFK VFGWCYRPQL IPASFELLIL ERVFGSGGPP  1320
AVRRLLSYPV TASVSRVPLA EAAVPLSFPP TPTSDGGDRE TGSRRPRLGR GAPVRLDGSS  1380
SAVSSAASQS GRRHVHGRLG LAPMHGRHVA SGRWPLHGGV QGGDGSFPVT ARAGPEERGR  1440
DPIDGGALFG GVILAPEVDA VVGRAEGPGS NGGSSQGPSV GFPSSSGGPG RSLESVGPVR  1500
PLEIVGPEIE LHLGGSGVDS GDLRSTFVGG GVAPSPAAGA TPVAAKAGMV PAADAGMIPP  1560
SPTAGAPPVT KDAGMVPAAD AGLVPPLPAA DAADMAPAAV GPPSSFPAAA SGGLPVAGSG  1620
EPSSSSTAPP VLTGGMKSLR MMLGPGTRIW PRSPITYSRK GRRVVASPVL SPVPAQPGFV  1680
ERMSKAVDSI LDDPPMRQRR PRIHAGGTLP RRSRRLAGAG VEPPSIPQRI PLGKLRIVKE  1740
LGLLQTDHAE LLSPGVLDDY AKAELQLNFQ KRRGHGLLSI IRPKFSGVLG EALDIAARWS  1800
GDVGWGNTDS GKMISTLLRR LLFSYVVAQQ SNEAQLKRRP RRAQYCSITM EKSILEQANS  1860
KYEVQGEYVF PGTRDRFPVE SQSNGFIEKA MGGHLGSIMS SMGRWRMRLE VPGAEVAEML  1920
PLARLLSRST DPVIRSRSKE LFMQCLHSVG FNAESLNDQL KALEIYHDWL DDDTMEDIAF  1980
PGLAELRGYW RGSLDASGGG NGDTMADFDF NGEDWEWGTY KTQRVLASGS FSNNDGLRLD  2040
KLFIQKDNAT LHADGSILGP LTNLHFAVLN FPVGLIPALV QAIESSTTDS IHFLRQWLTP  2100
IKGILHMEGD LRGTLAKPEC DVQIRLLDGT IGGIDLGRAE VLASVTPTSR FVFDANFEPT  2160
IQSGHVNIQG SIPVTYVDNS SIEESPEEAD GKQGIIRIPV WARDRGSSNE ISEARMVRDK  2220
TEEGWEFQLA EKLKGLSYNM LEPGEVRIDA DIKDGGMMLI TALSPYANWL QGYADVFLQV  2280
KGTVDQPVVD GSATFNRAIV NSPFLRTPLT NFAGTIQVIS NRLCISSMES RVGRKGRLSM  2340
KGSLPLKNSE PSANDKIDLK CEVLDIRAKN ILSGQVDSQL QVTGSILRPD LSGMIRLSHG  2400
EAYLPHDKGN GAAVTRLTSN KSSYLLSGFD QSTTSQDVSR ILGSLSTSAE RDQSDTEKTL  2460
EHGSFNPNID ARLNDLKLTL GPELRIVYPL ILNFAVSGDL ELNGMVHPKY LRPKGILTFE  2520
NGEVNLVATQ VRLKNDHLNA AKFEPDLGLD PVLDLVLVGS EWQFKIQSRA SMWQDNLVVT  2580
STRSVDQDVL SPSEAAKVFE SQLAESLLEG DGQLAFKKLA TATLETLMPR IEGKGEFGQA  2640
RWRLVYAPQI PSLLSVDPTV DPLKSLANNI SFATEVEVQL GKRLQASVVR QMKDSEMAMQ  2700
WTLIYQLTKG VSVTPPAALR APGHIEEHTK TADVVGAEKH IPMRHIGPHE QDTPHILQSH  2760
PDNIDIRLIP KVGMTFSNVD EAYNFYSQYA YEVGFPLKKY RERKNCKWLN CSMEGKNAER  2820
VAGNPRIRNT CSKRTQCKAG MKLKKIYDDA KENVISVRID LVNYEHNHEF LKKDTEKGQL  2880
QCNKTHDREY MEFLSAMQES RIPPHCIMDF VTEMHGGPEN VPITVQDMSN LKKAWQRERN  2940
ANDVSKLLSF FSLCKKDNPQ FFFRLSTGQR RENFKHILVP C

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	24	30	PRRRRRP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.68028	0.0	embryo\| endosperm\| meristem\| pollen\| root\| shoot

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G083374

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in third leaf and developing seeds (PubMed:24335509). Expressed in anthers, pistils, flag leaves and young panicles (PubMed:24335509). {ECO:0000269\|PubMed:24335509}.

Functional Description ? help Back to Top
Source	Description
UniProt	Part of the inner chloroplast membrane translocon complex (TIC) which associates with the outer chloroplast membrane translocon complex (TOC) and forms a supercomplex involved in protein precursor import into the chloroplast stroma (By similarity). Required for the regulation of starch granule size in amyloplasts (PubMed:24335509). {ECO:0000250\|UniProtKB:F4ISL7, ECO:0000269\|PubMed:24335509}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G083374_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	W0RYD3	0.0	SSG4_ORYSJ; Protein SUBSTANDARD STARCH GRAIN 4, chloroplastic
STRING	GRMZM2G083374_P01	0.0	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	2e-08	FAR1 family protein

Link Out ? help Back to Top
Phytozome	GRMZM2G083374_P01

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Matsushima R, et al. Amyloplast-localized SUBSTANDARD STARCH GRAIN4 protein influences the size of starch grains in rice endosperm. Plant Physiol., 2014. 164(2): p. 623-36 [PMID:24335509]