PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G083347_P02 | ||||||||
Common Name | LOC103640878, ZEAMMB73_391358 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 123aa MW: 13179.4 Da PI: 10.5517 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 48.8 | 2.3e-15 | 12 | 72 | 1 | 59 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.p.kkvkaeekewy 59 lppGfrF+Ptdeel+v+yL++++ +++l+++ i++v+i+ ++P+dL p ++ ++++ w+ GRMZM2G083347_P02 12 LPPGFRFRPTDEELIVHYLRRRALASPLPAAVDIPDVRILAHDPSDLlPpECGCSKSRPWH 72 79***************************9666*************963344444455665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.62E-16 | 10 | 79 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 15.581 | 12 | 123 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-8 | 13 | 78 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MEVKKEGAKA TLPPGFRFRP TDEELIVHYL RRRALASPLP AAVDIPDVRI LAHDPSDLLP 60 PECGCSKSRP WHRSSSRNAS PPAAAAACHG GGGLLVLMFH RLLIAEKQVA GVVAGSRRKM 120 AGV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.79469 | 1e-95 | endosperm| ovary| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G083347 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G083347_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU976346 | 0.0 | EU976346.1 Zea mays clone 865808 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008662554.1 | 8e-35 | NAC domain-containing protein 83 | ||||
TrEMBL | K7TJD6 | 2e-33 | K7TJD6_MAIZE; Putative NAC domain transcription factor superfamily protein | ||||
STRING | GRMZM2G083347_P01 | 3e-34 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.1 | 2e-08 | NAC domain containing protein 47 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G083347_P02 |
Entrez Gene | 103640878 |