PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G083347_P01 | ||||||||
Common Name | ZEAMMB73_391358 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 259aa MW: 27865.6 Da PI: 10.6607 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 145.8 | 2.2e-45 | 12 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrF+Ptdeel+v+yL++++ +++l+++ i++v+i+ ++P+dL p +e+e yfF++++ ky +g+r+nrat +gyWkatgk+k+ GRMZM2G083347_P01 12 LPPGFRFRPTDEELIVHYLRRRALASPLPAAVDIPDVRILAHDPSDLlP--PGFGEQERYFFTCKEAKYVKGRRANRATGAGYWKATGKEKP 101 79***************************9666**************43..345889*********************************** PP NAM 92 vlsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128 v ++ +g lvg+k++Lvfy+g+ p+g+kt+Wvmheyrl GRMZM2G083347_P01 102 VAVAvrgvqgqgqgQGVLVGMKRSLVFYRGKPPTGSKTEWVMHEYRL 148 *99988887766555556***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-49 | 10 | 184 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 48.62 | 12 | 184 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-26 | 13 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MEVKKEGAKA TLPPGFRFRP TDEELIVHYL RRRALASPLP AAVDIPDVRI LAHDPSDLLP 60 PGFGEQERYF FTCKEAKYVK GRRANRATGA GYWKATGKEK PVAVAVRGVQ GQGQGQGVLV 120 GMKRSLVFYR GKPPTGSKTE WVMHEYRLAG AGLAPCRRRH ADADGDGVAR APAEGWVLCR 180 VFRKKGSAAV ARRPGDRSDG EGDESAGGGG GCGGRGFIDF FARADAAGRR RRAPSPAVSS 240 RWLADASPQP EQEATSRGP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-40 | 8 | 188 | 13 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-40 | 8 | 188 | 13 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-40 | 8 | 188 | 13 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-40 | 8 | 188 | 13 | 169 | NO APICAL MERISTEM PROTEIN |
4dul_A | 9e-40 | 8 | 188 | 13 | 169 | NAC domain-containing protein 19 |
4dul_B | 9e-40 | 8 | 188 | 13 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.79469 | 0.0 | endosperm| ovary| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G083347 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G083347_P01 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008662554.1 | 0.0 | NAC domain-containing protein 83 | ||||
Swissprot | Q9FY93 | 8e-53 | NAC83_ARATH; NAC domain-containing protein 83 | ||||
TrEMBL | K7TJD6 | 0.0 | K7TJD6_MAIZE; Putative NAC domain transcription factor superfamily protein | ||||
STRING | GRMZM2G083347_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6317 | 32 | 54 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 3e-41 | NAC domain containing protein 83 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G083347_P01 |
Entrez Gene | 103640879 |
Publications ? help Back to Top | |||
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