PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G083239_P01
Common NameLOC103650011
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 278aa    MW: 29551.2 Da    PI: 10.7561
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G083239_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-163176147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       rg W + Ed +l+d+v+++G+++W++Ia+++  gR++k+c++rw++ 
  GRMZM2G083239_P01 31 RGHWRPAEDAKLKDLVALYGPKNWNLIASKLH-GRSGKSCRLRWFNQ 76
                       899*****************************.***********996 PP

2Myb_DNA-binding54.42.9e-1783127147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        r ++++ E+++lv a++ +G++ W++Iar ++ gRt++ +k++w+ +
  GRMZM2G083239_P01  83 RRPFSAAEEQRLVAAHRAHGNK-WALIARLFP-GRTDNAVKNHWHVL 127
                        679*******************.*********.***********975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.3012677IPR017930Myb domain
SuperFamilySSF466893.74E-2829124IPR009057Homeodomain-like
SMARTSM007172.5E-143079IPR001005SANT/Myb domain
PfamPF002497.4E-163176IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-253284IPR009057Homeodomain-like
CDDcd001675.67E-143475No hitNo description
PROSITE profilePS5129424.51878132IPR017930Myb domain
SMARTSM007177.6E-1482130IPR001005SANT/Myb domain
PfamPF002493.5E-1483126IPR001005SANT/Myb domain
CDDcd001672.24E-1185127No hitNo description
Gene3DG3DSA:1.10.10.603.8E-2085130IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MAAPPVAAAL SALHEAQETH GHDDSRAGHA RGHWRPAEDA KLKDLVALYG PKNWNLIASK  60
LHGRSGKSCR LRWFNQLDPR VNRRPFSAAE EQRLVAAHRA HGNKWALIAR LFPGRTDNAV  120
KNHWHVLTAR RQRERTGAPP RRRKPSSSSP AAHHHRAPSP LPFCAGKATR PRSCGDGDGD  180
GGGSDESASS TSSGTDLSSL GSVCAAAVPC FHFHRRRQSQ SSCDGTTCAC LLGSSSASPL  240
LRCIMLRSVP SPAAASDGGG CGKLAALPFF DFLGVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29301316107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129144RRQRERTGAPPRRRKP
2139143PRRRK
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G083239
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During anther development, expressed in anther vacuolar tissue from stage 9 to stage 13. {ECO:0000269|PubMed:20305120}.
UniprotTISSUE SPECIFICITY: Expressed in root vascular tissue, primordia of lateral roots, leaf collar, and veins of lemma, palea and pistil. {ECO:0000269|PubMed:20305120}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G083239_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9643190.0EU964319.1 Zea mays clone 277929 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008673911.10.0transcription factor CSA
SwissprotQ5NBM81e-66CSA_ORYSJ; Transcription factor CSA
TrEMBLA0A1D6MQP30.0A0A1D6MQP3_MAIZE; Myb domain protein 56
STRINGGRMZM2G083239_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.13e-61myb domain protein 105
Publications ? help Back to Top
  1. Leonard LM,Follette VM
    Sexual functioning in women reporting a history of child sexual abuse: review of the empirical literature and clinical implications.
    Annu Rev Sex Res, 2002. 13: p. 346-88
    [PMID:12836736]
  2. Wang L,Li X,Chen Z
    Sulfated modification of the polysaccharides obtained from defatted rice bran and their antitumor activities.
    Int. J. Biol. Macromol., 2009. 44(2): p. 211-4
    [PMID:19135473]
  3. Wang L,Huang H,Wei Y,Li X,Chen Z
    Characterization and anti-tumor activities of sulfated polysaccharide SRBPS2a obtained from defatted rice bran.
    Int. J. Biol. Macromol., 2009. 45(4): p. 427-31
    [PMID:19549538]
  4. Zhang H, et al.
    Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development.
    Plant Cell, 2010. 22(3): p. 672-89
    [PMID:20305120]
  5. Zhang H, et al.
    Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(1): p. 76-81
    [PMID:23256151]
  6. Zhu X, et al.
    Brassinosteroids promote development of rice pollen grains and seeds by triggering expression of Carbon Starved Anther, a MYB domain protein.
    Plant J., 2015. 82(4): p. 570-81
    [PMID:25754973]
  7. Li X, et al.
    Metabolic and transcriptomic signatures of rice floral organs reveal sugar starvation as a factor in reproductive failure under heat and drought stress.
    Plant Cell Environ., 2015. 38(10): p. 2171-92
    [PMID:25828772]
  8. Shaar-Moshe L,Hübner S,Peleg Z
    Identification of conserved drought-adaptive genes using a cross-species meta-analysis approach.
    BMC Plant Biol., 2015. 15: p. 111
    [PMID:25935420]