PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G082709_P01
Common NameLOC103637691
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 343aa    MW: 37371.3 Da    PI: 5.6565
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G082709_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.51e-5261331128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        lppGfrFhPtd+elv++yLk+kv++ k+el evi+ vd+yk+ePw+Lp k  + +++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd+
  GRMZM2G082709_P01   6 LPPGFRFHPTDDELVSYYLKRKVDNLKIEL-EVIPVVDLYKSEPWELPdKsFLPKRDLEWFFFCPRDRKYPNGSRTNRATATGYWKATGKDR 96 
                        79****************************.99**************96434445667********************************** PP

                NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +v + +g + gl+ktLvfy+grap ge+tdWvmheyrl
  GRMZM2G082709_P01  97 RVAC-DGGVYGLRKTLVFYRGRAPGGERTDWVMHEYRL 133
                        ****.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.16E-603155IPR003441NAC domain
PROSITE profilePS5100557.16156IPR003441NAC domain
PfamPF023654.0E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008283Biological Processcell proliferation
GO:0071365Biological Processcellular response to auxin stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGTMTLPPGF RFHPTDDELV SYYLKRKVDN LKIELEVIPV VDLYKSEPWE LPDKSFLPKR  60
DLEWFFFCPR DRKYPNGSRT NRATATGYWK ATGKDRRVAC DGGVYGLRKT LVFYRGRAPG  120
GERTDWVMHE YRLCQDLVHG ACNFIGAYAL CRVIKRHEAG LLLPPPASRA KAAGSARGHM  180
MSEVSSGEQL SASSSPSPFT PANSSPTRPT LDAAGAVTCA MAPEPGNAFQ LAHDASAALP  240
SLALPPPPLL LPSPHEDDTF FVSEGLPAAA ADWFGGDMGG VSESEQELKW DALFPCTGTF  300
PSVGVDTWNA AAASPTTMLC RQASDGIDDL AAFFFSEDNR IVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-51115912168NO APICAL MERISTEM PROTEIN
1ut4_B3e-51115912168NO APICAL MERISTEM PROTEIN
1ut7_A3e-51115912168NO APICAL MERISTEM PROTEIN
1ut7_B3e-51115912168NO APICAL MERISTEM PROTEIN
3swm_A3e-51115915171NAC domain-containing protein 19
3swm_B3e-51115915171NAC domain-containing protein 19
3swm_C3e-51115915171NAC domain-containing protein 19
3swm_D3e-51115915171NAC domain-containing protein 19
3swp_A3e-51115915171NAC domain-containing protein 19
3swp_B3e-51115915171NAC domain-containing protein 19
3swp_C3e-51115915171NAC domain-containing protein 19
3swp_D3e-51115915171NAC domain-containing protein 19
4dul_A3e-51115912168NAC domain-containing protein 19
4dul_B3e-51115912168NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.195471e-117endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G082709
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00439DAPTransfer from AT4G17980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G082709_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF7954881e-115JF795488.1 Zea mays NAC transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008658556.10.0NAC domain-containing protein 86
TrEMBLA0A1D6K9170.0A0A1D6K917_MAIZE; NAC-transcription factor43
STRINGGRMZM2G082709_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62093854
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.17e-81NAC domain containing protein 71